(35 nodes) DNA packaging complex network (Albugo candida)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	BN9_084020	SMC hinge domain-containing protein. (1140 aa)
	BN9_090270	Uncharacterized protein. (575 aa)
	BN9_088330	Histone H2B; Belongs to the histone H2B family. (120 aa)
	BN9_092630	Uncharacterized protein. (372 aa)
	BN9_090280	Uncharacterized protein. (573 aa)
	BN9_101750	PHD-type domain-containing protein. (519 aa)
	BN9_104590	DHR10 domain-containing protein. (393 aa)
	BN9_104600	DHR10 domain-containing protein. (463 aa)
	BN9_104610	DHR10 domain-containing protein. (422 aa)
	BN9_111210	Uncharacterized protein. (349 aa)
	BN9_130050	Uncharacterized protein. (244 aa)
	BN9_049030	Cnd1 domain-containing protein. (1493 aa)
	BN9_055890	Uncharacterized protein. (244 aa)
	BN9_014520	SCD domain-containing protein. (1330 aa)
	BN9_027780	Histone H2A; Belongs to the histone H2A family. (139 aa)
	BN9_033620	Uncharacterized protein. (1060 aa)
	BN9_033720	ANK_REP_REGION domain-containing protein; Belongs to the histone H2A family. (597 aa)
	BN9_078750	Structural maintenance of chromosomes protein. (1188 aa)
	BN9_123430	SMC hinge domain-containing protein. (504 aa)
	BN9_118220	Uncharacterized protein. (721 aa)
	BN9_007420	Uncharacterized protein; Belongs to the actin family. (457 aa)
	BN9_010980	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (103 aa)
	BN9_014530	SCD domain-containing protein. (1351 aa)
	BN9_010970	Histone H3; Belongs to the histone H3 family. (136 aa)
	BN9_017100	Histone domain-containing protein. (160 aa)
	BN9_081980	SWIB domain-containing protein. (394 aa)
	BN9_079970	HMG box domain-containing protein. (439 aa)
	BN9_084010	Structural maintenance of chromosomes protein. (1214 aa)
	BN9_086470	Uncharacterized protein. (645 aa)
	BN9_038730	Uncharacterized protein. (922 aa)
	BN9_038740	Uncharacterized protein. (602 aa)
	BN9_046170	Histone H3; Belongs to the histone H3 family. (136 aa)
	BN9_054660	Structural maintenance of chromosomes protein. (1231 aa)
	BN9_037000	Uncharacterized protein. (1298 aa)
	BN9_036990	Uncharacterized protein. (1430 aa)

Your Current Organism:

Albugo candida

NCBI taxonomy Id: 65357
Other names: A. candida, Aecidium candidum

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BN9_007420	BN9_010970	A0A024G097	A0A024G1Y2	Uncharacterized protein; Belongs to the actin family.	Histone H3; Belongs to the histone H3 family.	0.954
BN9_007420	BN9_010980	A0A024G097	A0A024G0M5	Uncharacterized protein; Belongs to the actin family.	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	0.984
BN9_007420	BN9_017100	A0A024G097	A0A024G2R8	Uncharacterized protein; Belongs to the actin family.	Histone domain-containing protein.	0.961
BN9_007420	BN9_027780	A0A024G097	A0A024G560	Uncharacterized protein; Belongs to the actin family.	Histone H2A; Belongs to the histone H2A family.	0.939
BN9_007420	BN9_033720	A0A024G097	A0A024G759	Uncharacterized protein; Belongs to the actin family.	ANK_REP_REGION domain-containing protein; Belongs to the histone H2A family.	0.959
BN9_007420	BN9_046170	A0A024G097	A0A024GAN7	Uncharacterized protein; Belongs to the actin family.	Histone H3; Belongs to the histone H3 family.	0.955
BN9_007420	BN9_079970	A0A024G097	A0A024GL22	Uncharacterized protein; Belongs to the actin family.	HMG box domain-containing protein.	0.990
BN9_007420	BN9_081980	A0A024G097	A0A024GL02	Uncharacterized protein; Belongs to the actin family.	SWIB domain-containing protein.	0.989
BN9_007420	BN9_086470	A0A024G097	A0A024GLJ1	Uncharacterized protein; Belongs to the actin family.	Uncharacterized protein.	0.457
BN9_007420	BN9_088330	A0A024G097	A0A024GMR0	Uncharacterized protein; Belongs to the actin family.	Histone H2B; Belongs to the histone H2B family.	0.840
BN9_007420	BN9_101750	A0A024G097	A0A024GQI4	Uncharacterized protein; Belongs to the actin family.	PHD-type domain-containing protein.	0.983
BN9_007420	BN9_111210	A0A024G097	A0A024GSM1	Uncharacterized protein; Belongs to the actin family.	Uncharacterized protein.	0.962
BN9_010970	BN9_007420	A0A024G1Y2	A0A024G097	Histone H3; Belongs to the histone H3 family.	Uncharacterized protein; Belongs to the actin family.	0.954
BN9_010970	BN9_010980	A0A024G1Y2	A0A024G0M5	Histone H3; Belongs to the histone H3 family.	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	0.998
BN9_010970	BN9_027780	A0A024G1Y2	A0A024G560	Histone H3; Belongs to the histone H3 family.	Histone H2A; Belongs to the histone H2A family.	0.981
BN9_010970	BN9_033620	A0A024G1Y2	A0A024G751	Histone H3; Belongs to the histone H3 family.	Uncharacterized protein.	0.449
BN9_010970	BN9_033720	A0A024G1Y2	A0A024G759	Histone H3; Belongs to the histone H3 family.	ANK_REP_REGION domain-containing protein; Belongs to the histone H2A family.	0.976
BN9_010970	BN9_049030	A0A024G1Y2	A0A024GBS4	Histone H3; Belongs to the histone H3 family.	Cnd1 domain-containing protein.	0.558
BN9_010970	BN9_054660	A0A024G1Y2	A0A024GD06	Histone H3; Belongs to the histone H3 family.	Structural maintenance of chromosomes protein.	0.521
BN9_010970	BN9_078750	A0A024G1Y2	A0A024GJ84	Histone H3; Belongs to the histone H3 family.	Structural maintenance of chromosomes protein.	0.690