(21 nodes) Biotin/lipoyl attachment network (Albugo candida)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	BN9_104310	Uncharacterized protein. (3056 aa)
	BN9_125230	Uncharacterized protein. (2316 aa)
	BN9_018570	Glycine cleavage system H protein; The H protein shuttles the methylamine group of glycine from the P protein to the T protein; Belongs to the GcvH family. (165 aa)
	BN9_023980	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (3561 aa)
	BN9_024000	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (3557 aa)
	BN9_025430	Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex. (381 aa)
	BN9_024010	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (3570 aa)
	BN9_023970	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (3505 aa)
	BN9_025420	Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex. (386 aa)
	BN9_023990	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (3459 aa)
	BN9_032820	Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second. (1149 aa)
	BN9_032830	Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second. (1182 aa)
	BN9_032840	Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second. (1137 aa)
	BN9_036790	DNA helicase; Belongs to the MCM family. (1320 aa)
	BN9_055480	Uncharacterized protein. (704 aa)
	BN9_077990	Lipoyl-binding domain-containing protein. (239 aa)
	BN9_078010	Lipoyl-binding domain-containing protein. (205 aa)
	BN9_078000	Lipoyl-binding domain-containing protein. (242 aa)
	BN9_087620	Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex. (420 aa)
	BN9_089710	Uncharacterized protein. (518 aa)
	BN9_124370	Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex. (464 aa)

Your Current Organism:

Albugo candida

NCBI taxonomy Id: 65357
Other names: A. candida, Aecidium candidum

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BN9_018570	BN9_025420	A0A024G2J0	A0A024G5B9	Glycine cleavage system H protein; The H protein shuttles the methylamine group of glycine from the P protein to the T protein; Belongs to the GcvH family.	Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex.	0.808
BN9_018570	BN9_025430	A0A024G2J0	A0A024G4H6	Glycine cleavage system H protein; The H protein shuttles the methylamine group of glycine from the P protein to the T protein; Belongs to the GcvH family.	Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex.	0.808
BN9_018570	BN9_077990	A0A024G2J0	A0A024GIX5	Glycine cleavage system H protein; The H protein shuttles the methylamine group of glycine from the P protein to the T protein; Belongs to the GcvH family.	Lipoyl-binding domain-containing protein.	0.772
BN9_018570	BN9_078000	A0A024G2J0	A0A024GKI8	Glycine cleavage system H protein; The H protein shuttles the methylamine group of glycine from the P protein to the T protein; Belongs to the GcvH family.	Lipoyl-binding domain-containing protein.	0.772
BN9_018570	BN9_078010	A0A024G2J0	A0A024GJ89	Glycine cleavage system H protein; The H protein shuttles the methylamine group of glycine from the P protein to the T protein; Belongs to the GcvH family.	Lipoyl-binding domain-containing protein.	0.772
BN9_018570	BN9_087620	A0A024G2J0	A0A024GLY3	Glycine cleavage system H protein; The H protein shuttles the methylamine group of glycine from the P protein to the T protein; Belongs to the GcvH family.	Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex.	0.772
BN9_018570	BN9_089710	A0A024G2J0	A0A024GMK3	Glycine cleavage system H protein; The H protein shuttles the methylamine group of glycine from the P protein to the T protein; Belongs to the GcvH family.	Uncharacterized protein.	0.833
BN9_018570	BN9_104310	A0A024G2J0	A0A024FUG0	Glycine cleavage system H protein; The H protein shuttles the methylamine group of glycine from the P protein to the T protein; Belongs to the GcvH family.	Uncharacterized protein.	0.436
BN9_018570	BN9_124370	A0A024G2J0	A0A024GUC2	Glycine cleavage system H protein; The H protein shuttles the methylamine group of glycine from the P protein to the T protein; Belongs to the GcvH family.	Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex.	0.772
BN9_018570	BN9_125230	A0A024G2J0	A0A024FVX6	Glycine cleavage system H protein; The H protein shuttles the methylamine group of glycine from the P protein to the T protein; Belongs to the GcvH family.	Uncharacterized protein.	0.436
BN9_025420	BN9_018570	A0A024G5B9	A0A024G2J0	Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex.	Glycine cleavage system H protein; The H protein shuttles the methylamine group of glycine from the P protein to the T protein; Belongs to the GcvH family.	0.808
BN9_025420	BN9_055480	A0A024G5B9	A0A024GDV8	Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex.	Uncharacterized protein.	0.763
BN9_025420	BN9_077990	A0A024G5B9	A0A024GIX5	Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex.	Lipoyl-binding domain-containing protein.	0.549
BN9_025420	BN9_078000	A0A024G5B9	A0A024GKI8	Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex.	Lipoyl-binding domain-containing protein.	0.549
BN9_025420	BN9_078010	A0A024G5B9	A0A024GJ89	Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex.	Lipoyl-binding domain-containing protein.	0.549
BN9_025420	BN9_087620	A0A024G5B9	A0A024GLY3	Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex.	Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex.	0.549
BN9_025420	BN9_089710	A0A024G5B9	A0A024GMK3	Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex.	Uncharacterized protein.	0.754
BN9_025420	BN9_124370	A0A024G5B9	A0A024GUC2	Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex.	Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex.	0.549
BN9_025430	BN9_018570	A0A024G4H6	A0A024G2J0	Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex.	Glycine cleavage system H protein; The H protein shuttles the methylamine group of glycine from the P protein to the T protein; Belongs to the GcvH family.	0.808
BN9_025430	BN9_055480	A0A024G4H6	A0A024GDV8	Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex.	Uncharacterized protein.	0.763