(4 nodes) Nucleosome assembly protein (NAP) network (Albugo candida)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	BN9_074670	Uncharacterized protein; Belongs to the nucleosome assembly protein (NAP) family. (1527 aa)
	BN9_074680	Uncharacterized protein; Belongs to the nucleosome assembly protein (NAP) family. (1447 aa)
	BN9_074660	Uncharacterized protein; Belongs to the nucleosome assembly protein (NAP) family. (1497 aa)
	BN9_036830	Uncharacterized protein; Belongs to the nucleosome assembly protein (NAP) family. (347 aa)

Your Current Organism:

Albugo candida

NCBI taxonomy Id: 65357
Other names: A. candida, Aecidium candidum

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file format is 'PNG': portable network graphic

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same PNG format, but at higher resolution

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BN9_036830	BN9_074660	A0A024G8D8	A0A024GJ49	Uncharacterized protein; Belongs to the nucleosome assembly protein (NAP) family.	Uncharacterized protein; Belongs to the nucleosome assembly protein (NAP) family.	0.610
BN9_036830	BN9_074670	A0A024G8D8	A0A024GI24	Uncharacterized protein; Belongs to the nucleosome assembly protein (NAP) family.	Uncharacterized protein; Belongs to the nucleosome assembly protein (NAP) family.	0.610
BN9_036830	BN9_074680	A0A024G8D8	A0A024GJN4	Uncharacterized protein; Belongs to the nucleosome assembly protein (NAP) family.	Uncharacterized protein; Belongs to the nucleosome assembly protein (NAP) family.	0.610
BN9_074660	BN9_036830	A0A024GJ49	A0A024G8D8	Uncharacterized protein; Belongs to the nucleosome assembly protein (NAP) family.	Uncharacterized protein; Belongs to the nucleosome assembly protein (NAP) family.	0.610
BN9_074670	BN9_036830	A0A024GI24	A0A024G8D8	Uncharacterized protein; Belongs to the nucleosome assembly protein (NAP) family.	Uncharacterized protein; Belongs to the nucleosome assembly protein (NAP) family.	0.610
BN9_074680	BN9_036830	A0A024GJN4	A0A024G8D8	Uncharacterized protein; Belongs to the nucleosome assembly protein (NAP) family.	Uncharacterized protein; Belongs to the nucleosome assembly protein (NAP) family.	0.610