STRINGSTRING
ADU65663.1 ADU65663.1 ADU65664.1 ADU65664.1 ADU65665.1 ADU65665.1 ADU65666.1 ADU65666.1 ADU65667.1 ADU65667.1 ADU65668.1 ADU65668.1 cas1 cas1 ADU65780.1 ADU65780.1 ADU66003.1 ADU66003.1 ADU66048.1 ADU66048.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ADU65663.1KEGG: ypb:YPTS_2599 CRISPR-associated Csy4 family protein; TIGRFAM: CRISPR-associated protein, Csy4 family; PFAM: CRISPR-associated protein Csy4. (182 aa)
ADU65664.1KEGG: dak:DaAHT2_1525 CRISPR-associated protein, Csy3 family; TIGRFAM: CRISPR-associated protein, Csy3 family; PFAM: CRISPR-associated protein Csy3. (332 aa)
ADU65665.1KEGG: tau:Tola_1361 CRISPR-associated protein, Csy2 family; TIGRFAM: CRISPR-associated protein, Csy2 family; PFAM: CRISPR-associated protein Csy2. (328 aa)
ADU65666.1Hypothetical protein. (67 aa)
ADU65667.1KEGG: ssm:Spirs_0440 transposase IS3/IS911 family protein; manually curated; PFAM: transposase IS3/IS911 family protein. (383 aa)
ADU65668.1KEGG: tau:Tola_1360 CRISPR-associated protein, Csy1 family; TIGRFAM: CRISPR-associated protein, Csy1 family; PFAM: CRISPR-associated protein Csy1. (387 aa)
cas1CRISPR-associated protein Cas1; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette. (325 aa)
ADU65780.1KEGG: ava:Ava_4177 hypothetical protein. (90 aa)
ADU66003.1KEGG: slt:Slit_0674 transmembrane protein. (119 aa)
ADU66048.1Histone family protein DNA-binding protein; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. (91 aa)
Your Current Organism:
Desulfurispirillum indicum
NCBI taxonomy Id: 653733
Other names: D. indicum S5, Desulfurispirillum indicum S5, Desulfurispirillum indicum str. S5, Desulfurispirillum indicum strain S5, bacterium S5, dissimilatory selenate-respiring bacterium S5
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