Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ADU65290.1 | ADU65291.1 | Selin_0542 | Selin_0543 | Hypothetical protein; KEGG: pbr:PB2503_12849 mechanosensitive ion channel family protein. | Hypothetical protein; KEGG: ser:SERP0686 spermidine/putrescine ABC transporter, ATP-binding protein. | 0.773 |
| ADU65290.1 | ADU65294.1 | Selin_0542 | Selin_0546 | Hypothetical protein; KEGG: pbr:PB2503_12849 mechanosensitive ion channel family protein. | Non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family; Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA/RNA and avoiding chromosomal lesions. Belongs to the HAM1 NTPase family. | 0.605 |
| ADU65290.1 | ADU65295.1 | Selin_0542 | Selin_0547 | Hypothetical protein; KEGG: pbr:PB2503_12849 mechanosensitive ion channel family protein. | KEGG: ccv:CCV52592_0205 hypothetical protein. | 0.597 |
| ADU65290.1 | def | Selin_0542 | Selin_0539 | Hypothetical protein; KEGG: pbr:PB2503_12849 mechanosensitive ion channel family protein. | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 0.566 |
| ADU65290.1 | fmt | Selin_0542 | Selin_0538 | Hypothetical protein; KEGG: pbr:PB2503_12849 mechanosensitive ion channel family protein. | methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family. | 0.566 |
| ADU65290.1 | murI | Selin_0542 | Selin_0544 | Hypothetical protein; KEGG: pbr:PB2503_12849 mechanosensitive ion channel family protein. | Glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis. | 0.773 |
| ADU65291.1 | ADU65290.1 | Selin_0543 | Selin_0542 | Hypothetical protein; KEGG: ser:SERP0686 spermidine/putrescine ABC transporter, ATP-binding protein. | Hypothetical protein; KEGG: pbr:PB2503_12849 mechanosensitive ion channel family protein. | 0.773 |
| ADU65291.1 | ADU65294.1 | Selin_0543 | Selin_0546 | Hypothetical protein; KEGG: ser:SERP0686 spermidine/putrescine ABC transporter, ATP-binding protein. | Non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family; Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA/RNA and avoiding chromosomal lesions. Belongs to the HAM1 NTPase family. | 0.605 |
| ADU65291.1 | ADU65295.1 | Selin_0543 | Selin_0547 | Hypothetical protein; KEGG: ser:SERP0686 spermidine/putrescine ABC transporter, ATP-binding protein. | KEGG: ccv:CCV52592_0205 hypothetical protein. | 0.597 |
| ADU65291.1 | def | Selin_0543 | Selin_0539 | Hypothetical protein; KEGG: ser:SERP0686 spermidine/putrescine ABC transporter, ATP-binding protein. | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 0.630 |
| ADU65291.1 | fmt | Selin_0543 | Selin_0538 | Hypothetical protein; KEGG: ser:SERP0686 spermidine/putrescine ABC transporter, ATP-binding protein. | methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family. | 0.566 |
| ADU65291.1 | murI | Selin_0543 | Selin_0544 | Hypothetical protein; KEGG: ser:SERP0686 spermidine/putrescine ABC transporter, ATP-binding protein. | Glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis. | 0.773 |
| ADU65294.1 | ADU65290.1 | Selin_0546 | Selin_0542 | Non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family; Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA/RNA and avoiding chromosomal lesions. Belongs to the HAM1 NTPase family. | Hypothetical protein; KEGG: pbr:PB2503_12849 mechanosensitive ion channel family protein. | 0.605 |
| ADU65294.1 | ADU65291.1 | Selin_0546 | Selin_0543 | Non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family; Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA/RNA and avoiding chromosomal lesions. Belongs to the HAM1 NTPase family. | Hypothetical protein; KEGG: ser:SERP0686 spermidine/putrescine ABC transporter, ATP-binding protein. | 0.605 |
| ADU65294.1 | ADU65295.1 | Selin_0546 | Selin_0547 | Non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family; Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA/RNA and avoiding chromosomal lesions. Belongs to the HAM1 NTPase family. | KEGG: ccv:CCV52592_0205 hypothetical protein. | 0.762 |
| ADU65294.1 | ADU65298.1 | Selin_0546 | Selin_0550 | Non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family; Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA/RNA and avoiding chromosomal lesions. Belongs to the HAM1 NTPase family. | PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; KEGG: gme:Gmet_0066 Fmu, rRNA SAM-dependent methyltransferase:Nop2p; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. | 0.590 |
| ADU65294.1 | def | Selin_0546 | Selin_0539 | Non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family; Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA/RNA and avoiding chromosomal lesions. Belongs to the HAM1 NTPase family. | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 0.532 |
| ADU65294.1 | fmt | Selin_0546 | Selin_0538 | Non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family; Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA/RNA and avoiding chromosomal lesions. Belongs to the HAM1 NTPase family. | methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family. | 0.456 |
| ADU65294.1 | murI | Selin_0546 | Selin_0544 | Non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family; Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA/RNA and avoiding chromosomal lesions. Belongs to the HAM1 NTPase family. | Glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis. | 0.964 |
| ADU65295.1 | ADU65290.1 | Selin_0547 | Selin_0542 | KEGG: ccv:CCV52592_0205 hypothetical protein. | Hypothetical protein; KEGG: pbr:PB2503_12849 mechanosensitive ion channel family protein. | 0.597 |
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