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ADU67237.1 | Transposase; Manually curated; KEGG: pol:Bpro_4964 transposase. (279 aa) | ||||
ADU67326.1 | KEGG: ttr:Tter_1170 DNA-3-methyladenine glycosylase; TIGRFAM: DNA-3-methyladenine glycosylase; PFAM: methylpurine-DNA glycosylase (MPG); Belongs to the DNA glycosylase MPG family. (195 aa) | ||||
ADU67287.1 | DNA polymerase III, alpha subunit; SMART: phosphoesterase PHP domain protein; TIGRFAM: DNA polymerase III, alpha subunit; KEGG: pca:Pcar_1222 DNA polymerase III, alpha subunit; PFAM: DNA polymerase III alpha subunit; PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type. (1163 aa) | ||||
uvrA | Excinuclease ABC, A subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate. (941 aa) | ||||
uvrB | Excinuclease ABC, B subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...] (660 aa) | ||||
ADU67235.1 | PFAM: UvrD/REP helicase; KEGG: noc:Noc_0988 UvrD/REP helicase; Belongs to the helicase family. UvrD subfamily. (1123 aa) | ||||
ADU67234.1 | HhH-GPD family protein; KEGG: drt:Dret_0892 A/G-specific adenine glycosylase; PFAM: HhH-GPD family protein; SMART: HhH-GPD family protein. (340 aa) | ||||
ADU67225.1 | Transposase; Manually curated; KEGG: pol:Bpro_4964 transposase. (279 aa) | ||||
ADU67214.1 | KEGG: csa:Csal_0465 deoxyribodipyrimidine photo-lyase type I; PFAM: DNA photolyase FAD-binding; DNA photolyase domain protein. (469 aa) | ||||
ADU67203.1 | KEGG: mgm:Mmc1_2863 hypothetical protein. (327 aa) | ||||
ADU67131.1 | KEGG: lch:Lcho_0372 phage SPO1 DNA polymerase-related protein; TIGRFAM: phage SPO1 DNA polymerase-related protein; PFAM: Uracil-DNA glycosylase superfamily. (279 aa) | ||||
ADU67092.1 | KEGG: syp:SYNPCC7002_A1133 hypothetical protein. (248 aa) | ||||
ADU67063.1 | KEGG: noc:Noc_1856 hypothetical protein. (333 aa) | ||||
ADU67059.1 | Transposase; Manually curated; KEGG: pol:Bpro_4964 transposase. (279 aa) | ||||
ADU67017.1 | PFAM: D12 class N6 adenine-specific DNA methyltransferase; KEGG: dze:Dd1591_3545 D12 class N6 adenine-specific DNA methyltransferase. (312 aa) | ||||
ADU67016.1 | Transposase; Manually curated; KEGG: pol:Bpro_4964 transposase. (279 aa) | ||||
ADU67013.1 | Transposase; Manually curated; KEGG: pol:Bpro_4964 transposase. (279 aa) | ||||
ADU67005.1 | Transposase; Manually curated; KEGG: pol:Bpro_4964 transposase. (279 aa) | ||||
topA | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] (768 aa) | ||||
ADU66918.1 | Transposase; Manually curated; KEGG: pol:Bpro_4964 transposase. (279 aa) | ||||
ADU66775.1 | PFAM: SapC family protein; KEGG: mgm:Mmc1_2181 SapC family protein. (234 aa) | ||||
mutL | DNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. (595 aa) | ||||
ADU66731.1 | KEGG: chy:CHY_1834 CO dehydrogenase/acetyl-CoA synthase complex, accessory protein CooC. (261 aa) | ||||
ADU66721.1 | Transposase; Manually curated; KEGG: pol:Bpro_4964 transposase. (279 aa) | ||||
ADU66720.1 | KEGG: noc:Noc_1856 hypothetical protein. (333 aa) | ||||
ADU66715.1 | KEGG: noc:Noc_1856 hypothetical protein. (333 aa) | ||||
dnaX | DNA polymerase III, subunits gamma and tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. (548 aa) | ||||
ADU66659.1 | KEGG: shw:Sputw3181_1082 DNA-directed DNA polymerase; PFAM: UMUC domain protein DNA-repair protein. (426 aa) | ||||
ADU66567.1 | KEGG: gme:Gmet_0125 hypothetical protein. (251 aa) | ||||
ADU66522.1 | PFAM: transposase IS4 family protein; KEGG: mba:Mbar_A1346 transposase. (278 aa) | ||||
ADU66472.1 | KEGG: dar:Daro_1297 hypothetical protein. (196 aa) | ||||
priA | Primosomal protein N; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily. (694 aa) | ||||
ADU66439.1 | PFAM: type III restriction protein res subunit; protein of unknown function DUF450; KEGG: dol:Dole_2724 type III restriction protein res subunit; SMART: DEAD-like helicase. (936 aa) | ||||
ADU66398.1 | KEGG: alv:Alvin_2062 exodeoxyribonuclease III; TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase. (272 aa) | ||||
nth | Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. (216 aa) | ||||
polA | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. (881 aa) | ||||
xseB | Exonuclease VII small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family. (77 aa) | ||||
mutS | DNA mismatch repair protein MutS; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity. (838 aa) | ||||
gyrA | DNA gyrase, A subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. (821 aa) | ||||
radA | DNA repair protein RadA; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function. (453 aa) | ||||
nfo | Apurinic endonuclease Apn1; Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin. (283 aa) | ||||
ADU66226.1 | KEGG: shw:Sputw3181_1082 DNA-directed DNA polymerase; PFAM: UMUC domain protein DNA-repair protein. (429 aa) | ||||
ADU66222.1 | PFAM: Resolvase domain; Resolvase helix-turn-helix domain protein; KEGG: gbm:Gbem_3678 Resolvase domain. (212 aa) | ||||
ADU66220.1 | PFAM: D12 class N6 adenine-specific DNA methyltransferase; KEGG: slp:Slip_1825 D12 class N6 adenine-specific DNA methyltransferase. (347 aa) | ||||
ADU66180.1 | DNA-cytosine methyltransferase; KEGG: pst:PSPTO_2386 C-5 cytosine-specific DNA methylase family protein; TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family. (306 aa) | ||||
ADU66162.1 | KEGG: noc:Noc_0626 hypothetical protein. (184 aa) | ||||
ADU65943.1 | formamidopyrimidine-DNA glycosylase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates. (278 aa) | ||||
ruvC | Crossover junction endodeoxyribonuclease RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group. (171 aa) | ||||
ruvA | Holliday junction DNA helicase RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. (202 aa) | ||||
ruvB | Holliday junction DNA helicase RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. (341 aa) | ||||
uvrC | Excinuclease ABC, C subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. (604 aa) | ||||
cas1-2 | CRISPR-associated protein Cas1; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette. (333 aa) | ||||
ADU65749.1 | Hypothetical protein; Manually curated; KEGG: pol:Bpro_4964 transposase. (279 aa) | ||||
ADU65712.1 | Hypothetical protein; Manually curated; KEGG: pol:Bpro_4964 transposase. (279 aa) | ||||
cas1 | CRISPR-associated protein Cas1; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette. (325 aa) | ||||
ADU65670.1 | Hypothetical protein; Manually curated; KEGG: pol:Bpro_4964 transposase. (279 aa) | ||||
ligA | DNA ligase, NAD-dependent; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA; Belongs to the NAD-dependent DNA ligase family. LigA subfamily. (660 aa) | ||||
ADU65635.1 | Hypothetical protein; KEGG: bdu:BDU_454 DNA polymerase III delta subunit. (303 aa) | ||||
mutS2 | MutS2 family protein; Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity; Belongs to the DNA mismatch repair MutS family. MutS2 subfamily. (785 aa) | ||||
xseA | Exodeoxyribonuclease VII, large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family. (469 aa) | ||||
gyrB | DNA gyrase, B subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. (799 aa) | ||||
ung | uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine. (233 aa) | ||||
ADU65404.1 | Hypothetical protein; KEGG: nde:NIDE0136 putative type I restriction endonuclease, R subunit. (69 aa) | ||||
ADU65309.1 | Hypothetical protein; KEGG: aar:Acear_0044 DNA polymerase III, delta prime subunit. (308 aa) | ||||
ADU65306.1 | Hydrolase, TatD family; KEGG: seu:SEQ_0330 TatD related DNase; TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease. (263 aa) | ||||
ADU65226.1 | KEGG: neu:NE1223 putative transposase. (343 aa) | ||||
ADU65172.1 | KEGG: glo:Glov_1954 ATP-dependent DNA helicase RecG; PFAM: DEAD/DEAH box helicase domain protein; nucleic acid binding OB-fold tRNA/helicase-type; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein. (675 aa) | ||||
ADU65063.1 | TIGRFAM: DNA-3-methyladenine glycosylase I; KEGG: gsu:GSU0567 DNA-3-methyladenine glycosylase I; PFAM: methyladenine glycosylase. (187 aa) | ||||
ADU64995.1 | KEGG: mgm:Mmc1_2698 hypothetical protein. (328 aa) | ||||
ADU64994.1 | Hypothetical protein; Manually curated; KEGG: mgm:Mmc1_2781 hypothetical protein. (309 aa) | ||||
ADU64840.1 | PFAM: UvrD/REP helicase; KEGG: gwc:GWCH70_0270 ATP-dependent DNA helicase PcrA. (643 aa) | ||||
ADU64837.1 | Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily. (450 aa) | ||||
recA | recA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. (357 aa) | ||||
ADU64761.1 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] (368 aa) |