Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ADU65202.1 | ADU65883.1 | Selin_0449 | Selin_1148 | Dihydrouridine synthase DuS; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family. | PFAM: methyltransferase; KEGG: fnu:FN1606 3-deoxy-D-manno-octulosonic-acid transferase. | 0.524 |
| ADU65202.1 | ADU66787.1 | Selin_0449 | Selin_2067 | Dihydrouridine synthase DuS; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family. | PFAM: Methyltransferase type 11; KEGG: alv:Alvin_1115 methyltransferase type 11. | 0.424 |
| ADU65202.1 | gltX | Selin_0449 | Selin_0902 | Dihydrouridine synthase DuS; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family. | glutamyl-tRNA synthetase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily. | 0.588 |
| ADU65202.1 | gluQ | Selin_0449 | Selin_2200 | Dihydrouridine synthase DuS; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family. | Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain; Catalyzes the tRNA-independent activation of glutamate in presence of ATP and the subsequent transfer of glutamate onto a tRNA(Asp). Glutamate is transferred on the 2-amino-5-(4,5-dihydroxy-2- cyclopenten-1-yl) moiety of the queuosine in the wobble position of the QUC anticodon; Belongs to the class-I aminoacyl-tRNA synthetase family. GluQ subfamily. | 0.588 |
| ADU65202.1 | pheT | Selin_0449 | Selin_2432 | Dihydrouridine synthase DuS; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family. | KEGG: mxa:MXAN_3595 phenylalanyl-tRNA synthetase subunit beta; TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily. | 0.605 |
| ADU65202.1 | proS | Selin_0449 | Selin_1885 | Dihydrouridine synthase DuS; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family. | prolyl-tRNA synthetase; Catalyzes the attachment of proline to tRNA(Pro) in a two- step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves dea [...] | 0.822 |
| ADU65202.1 | trmD | Selin_0449 | Selin_2570 | Dihydrouridine synthase DuS; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family. | tRNA (guanine-N1)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family. | 0.488 |
| ADU65202.1 | truA | Selin_0449 | Selin_1265 | Dihydrouridine synthase DuS; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family. | tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs. | 0.603 |
| ADU65311.1 | ADU66799.1 | Selin_0563 | Selin_2079 | PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: swo:Swol_2044 YbaK/EbsC family protein. | KEGG: tgr:Tgr7_2730 YbaK/EbsC protein; TIGRFAM: ybaK/ebsC protein; PFAM: YbaK/prolyl-tRNA synthetase associated region; Belongs to the prolyl-tRNA editing family. YbaK/EbsC subfamily. | 0.479 |
| ADU65311.1 | metG | Selin_0563 | Selin_0559 | PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: swo:Swol_2044 YbaK/EbsC family protein. | methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. | 0.752 |
| ADU65883.1 | ADU65202.1 | Selin_1148 | Selin_0449 | PFAM: methyltransferase; KEGG: fnu:FN1606 3-deoxy-D-manno-octulosonic-acid transferase. | Dihydrouridine synthase DuS; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family. | 0.524 |
| ADU65883.1 | ADU66787.1 | Selin_1148 | Selin_2067 | PFAM: methyltransferase; KEGG: fnu:FN1606 3-deoxy-D-manno-octulosonic-acid transferase. | PFAM: Methyltransferase type 11; KEGG: alv:Alvin_1115 methyltransferase type 11. | 0.800 |
| ADU65883.1 | ADU66975.1 | Selin_1148 | Selin_2255 | PFAM: methyltransferase; KEGG: fnu:FN1606 3-deoxy-D-manno-octulosonic-acid transferase. | tRNA/rRNA methyltransferase (SpoU); Could methylate the ribose at the nucleotide 34 wobble position in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily. | 0.446 |
| ADU65883.1 | serS | Selin_1148 | Selin_0293 | PFAM: methyltransferase; KEGG: fnu:FN1606 3-deoxy-D-manno-octulosonic-acid transferase. | seryl-tRNA synthetase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec). | 0.816 |
| ADU65883.1 | truA | Selin_1148 | Selin_1265 | PFAM: methyltransferase; KEGG: fnu:FN1606 3-deoxy-D-manno-octulosonic-acid transferase. | tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs. | 0.595 |
| ADU65883.1 | truB | Selin_1148 | Selin_1629 | PFAM: methyltransferase; KEGG: fnu:FN1606 3-deoxy-D-manno-octulosonic-acid transferase. | tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily. | 0.825 |
| ADU65897.1 | aspS | Selin_1162 | Selin_0828 | PFAM: formyl transferase domain protein; KEGG: ppd:Ppro_0055 methionyl-tRNA formyltransferase. | aspartyl-tRNA synthetase; Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn); Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily. | 0.442 |
| ADU65897.1 | fmt | Selin_1162 | Selin_0538 | PFAM: formyl transferase domain protein; KEGG: ppd:Ppro_0055 methionyl-tRNA formyltransferase. | methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family. | 0.927 |
| ADU65897.1 | gatA | Selin_1162 | Selin_1827 | PFAM: formyl transferase domain protein; KEGG: ppd:Ppro_0055 methionyl-tRNA formyltransferase. | glutamyl-tRNA(Gln) amidotransferase, A subunit; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu- tRNA(Gln). | 0.452 |
| ADU65897.1 | gatC | Selin_1162 | Selin_1826 | PFAM: formyl transferase domain protein; KEGG: ppd:Ppro_0055 methionyl-tRNA formyltransferase. | glutamyl-tRNA(Gln) amidotransferase, C subunit; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatC family. | 0.456 |
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