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| | ADU65344.1 | Stage II sporulation protein E; KEGG: geo:Geob_2606 protein serine phosphatase with GAF(s) sensor(s); PFAM: Stage II sporulation protein E; GAF domain protein; Na+/solute symporter; SMART: protein phosphatase 2C domain protein; GAF domain protein. (1097 aa) |
| | ADU65373.1 | PFAM: Saccharopine dehydrogenase; KEGG: pfl:PFL_3454 hypothetical protein. (374 aa) |
| | rpsF | Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. (145 aa) |
| | rpsR | Ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family. (123 aa) |
| | nifH | Nitrogenase iron protein; The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex, which has 2 components: the iron protein and the molybdenum-iron protein; Belongs to the NifH/BchL/ChlL family. (292 aa) |
| | ADU65451.1 | KEGG: pat:Patl_3876 methylated-DNA--protein-cysteine methyltransferase; TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding. (159 aa) |
| | ADU65457.1 | TIGRFAM: cysteine desulfurase, NifS family; KEGG: sdl:Sdel_2154 cysteine desulfurase, NifS family; PFAM: aminotransferase class V. (399 aa) |
| | ADU65471.1 | RNA binding S1 domain protein; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. (544 aa) |
| | ADU65476.1 | KEGG: ddf:DEFDS_0428 hypothetical protein; PFAM: Stage II sporulation protein E; SMART: protein phosphatase 2C domain protein. (547 aa) |
| | ychF | GTP-binding protein YchF; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner. (367 aa) |
| | argB | Acetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily. (299 aa) |
| | ADU65515.1 | Protoporphyrinogen oxidase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX. (461 aa) |
| | hemH | Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family. (317 aa) |
| | ADU65518.1 | KEGG: gbm:Gbem_2843 acetyl-CoA hydrolase/transferase; PFAM: acetyl-CoA hydrolase/transferase. (519 aa) |
| | ADU65521.1 | PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: gme:Gmet_2937 fumarylacetoacetate (FAA) hydrolase. (219 aa) |
| | argC | N-acetyl-gamma-glutamyl-phosphate reductase; Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde. Belongs to the NAGSA dehydrogenase family. Type 1 subfamily. (345 aa) |
| | rpmH | KEGG: bcl:ABC4121 50S ribosomal protein L34; TIGRFAM: ribosomal protein L34; PFAM: ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family. (45 aa) |
| | ADU65566.1 | PFAM: phosphoesterase DHHA1; KEGG: mag:amb3955 exopolyphosphatase-like protein. (312 aa) |
| | bioB | Biotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family. (334 aa) |
| | ADU65609.1 | TIGRFAM: pseudaminic acid synthase; KEGG: dar:Daro_1248 N-acetylneuraminate synthase; PFAM: N-acetylneuraminic acid synthase domain; SAF domain protein. (351 aa) |
| | rpsU | KEGG: dap:Dacet_2801 30S ribosomal protein S21; TIGRFAM: ribosomal protein S21; PFAM: ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family. (70 aa) |
| | ADU65685.1 | TIGRFAM: cysteine desulfurase DndA; KEGG: gsu:GSU2786 cysteine desulfurase; PFAM: aminotransferase class V. (380 aa) |
| | guaB | Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family. (489 aa) |
| | ADU65759.1 | Diacylglycerol kinase; Recycling of diacylglycerol produced during the turnover of membrane phospholipid; Belongs to the bacterial diacylglycerol kinase family. (127 aa) |
| | kdkA | 3-deoxy-D-manno-octulosonic-acid kinase; Catalyzes the ATP-dependent phosphorylation of the 3-deoxy-D- manno-octulosonic acid (Kdo) residue in Kdo-lipid IV(A) at the 4-OH position; Belongs to the protein kinase superfamily. KdkA/RfaP family. (237 aa) |
| | ADU65786.1 | KEGG: tro:trd_A0109 cysteine desulfurase, (m-Nfs1); PFAM: aminotransferase class V. (389 aa) |
| | ackA | Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family. (428 aa) |
| | ADU65817.1 | PFAM: CMP/dCMP deaminase zinc-binding; KEGG: zpr:ZPR_1903 guanine deaminase. (157 aa) |
| | ADU65826.1 | PFAM: protein of unknown function UPF0047; KEGG: gur:Gura_2106 hypothetical protein. (138 aa) |
| | ADU65829.1 | PFAM: CMP/dCMP deaminase zinc-binding; KEGG: aar:Acear_2228 CMP/dCMP deaminase zinc-binding protein. (154 aa) |
| | ADU65847.1 | PFAM: Tetratricopeptide TPR_1 repeat-containing protein; KEGG: brm:Bmur_1603 TPR repeat-containing protein. (522 aa) |
| | ADU65853.1 | PFAM: Radical SAM domain protein; KEGG: mem:Memar_1142 radical SAM domain-containing protein. (313 aa) |
| | ADU65890.1 | Arginine decarboxylase; Catalyzes the biosynthesis of agmatine from arginine. Belongs to the Orn/Lys/Arg decarboxylase class-II family. SpeA subfamily. (624 aa) |
| | nadD | Nicotinate (nicotinamide) nucleotide adenylyltransferase; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD). (204 aa) |
| | ADU65937.1 | KEGG: thx:Thet_1472 hypothetical protein. (193 aa) |
| | ADU65940.1 | PFAM: thioesterase superfamily protein; KEGG: dra:DR_0279 hypothetical protein. (150 aa) |
| | tadA | CMP/dCMP deaminase zinc-binding protein; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family. (167 aa) |
| | ADU65999.1 | DNA repair protein RecN; May be involved in recombinational repair of damaged DNA. (554 aa) |
| | truA | tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs. (263 aa) |
| | ADU66005.1 | PFAM: Silent information regulator protein Sir2; KEGG: gsu:GSU3087 Sir2 family transcriptional regulator. (276 aa) |
| | ADU66048.1 | Histone family protein DNA-binding protein; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. (91 aa) |
| | ADU66052.1 | PFAM: ABC-1 domain-containing protein; KEGG: glo:Glov_1388 ABC-1 domain protein. (522 aa) |
| | ADU66056.1 | Hypothetical protein; KEGG: dbr:Deba_1896 tetratricopeptide TPR_2 repeat protein. (587 aa) |
| | ispE | 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol. (291 aa) |
| | ADU66079.1 | 3-deoxy-7-phosphoheptulonate synthase; KEGG: llo:LLO_2507 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase; PFAM: DAHP synthetase class II; Belongs to the class-II DAHP synthase family. (451 aa) |
| | ADU66118.1 | Hypothetical protein; KEGG: bcr:BCAH187_A2978 putative glutathionylspermidine synthase. (216 aa) |
| | ybeY | Protein of unknown function UPF0054; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. (152 aa) |
| | ADU66127.1 | KEGG: gur:Gura_1586 hypothetical protein. (101 aa) |
| | rpsJ | Ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. (104 aa) |
| | rplC | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. (209 aa) |
| | rplD | Ribosomal protein L4/L1e; Forms part of the polypeptide exit tunnel. (207 aa) |
| | rplW | Ribosomal protein L25/L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. (94 aa) |
| | rplB | Ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. (274 aa) |
| | rpsS | Ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. (93 aa) |
| | rplV | Ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. (109 aa) |
| | rpsC | Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. (230 aa) |
| | rplP | Ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family. (141 aa) |
| | rpmC | Ribosomal protein L29; KEGG: clj:CLJU_c40960 50S ribosomal protein L29; TIGRFAM: ribosomal protein L29; PFAM: ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family. (65 aa) |
| | rpsQ | 30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. (87 aa) |
| | rplN | Ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. (122 aa) |
| | rplX | Ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit. (106 aa) |
| | rplE | 50S ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. (179 aa) |
| | rpsZ | Ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site. (61 aa) |
| | rpsH | Ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family. (133 aa) |
| | rplF | Ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. (180 aa) |
| | rplR | Ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. (121 aa) |
| | rpsE | Ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. (167 aa) |
| | ADU65106.1 | KEGG: slg:SLGD_00790 LSU ribosomal protein L30p (L7e); TIGRFAM: ribosomal protein L30; PFAM: ribosomal protein L30. (62 aa) |
| | rplO | Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. (146 aa) |
| | adk | Adenylate kinase; Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism; Belongs to the adenylate kinase family. (215 aa) |
| | rpmJ | KEGG: ddf:DEFDS_1749 50S ribosomal protein L36; TIGRFAM: ribosomal protein L36; PFAM: ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family. (37 aa) |
| | rpsM | 30S ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family. (120 aa) |
| | rpsK | 30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. (127 aa) |
| | rpsD | Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. (208 aa) |
| | rplQ | KEGG: ddf:DEFDS_1744 50S ribosomal protein L17; TIGRFAM: ribosomal protein L17; PFAM: ribosomal protein L17. (139 aa) |
| | ADU65118.1 | KEGG: gur:Gura_2686 riboflavin biosynthesis protein RibF; TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: Riboflavin kinase; FAD synthetase; Belongs to the ribF family. (312 aa) |
| | ADU65124.1 | PFAM: Pirin domain protein; KEGG: chu:CHU_2096 pirin-related protein; Belongs to the pirin family. (241 aa) |
| | ADU65129.1 | TIGRFAM: redox-active disulfide protein 2; KEGG: ank:AnaeK_4013 redox-active disulfide protein 2. (77 aa) |
| | ADU65170.1 | TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; KEGG: sub:SUB0816 2-amino-4-hydroxy-6-hydroxymethyldihydropteridi ne pyrophosphokinase; PFAM: 78-dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK. (178 aa) |
| | ADU65215.1 | PFAM: Tetratricopeptide TPR_1 repeat-containing protein; KEGG: ttr:Tter_0083 tetratricopeptide TPR_2 repeat protein. (495 aa) |
| | ADU65224.1 | AAA ATPase central domain protein; KEGG: chy:CHY_2201 recombination factor protein RarA; PFAM: AAA ATPase central domain protein; SMART: AAA ATPase. (420 aa) |
| | ADU65225.1 | Holliday junction resolvase YqgF; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. (152 aa) |
| | ADU65238.1 | KEGG: dak:DaAHT2_0137 hypothetical protein. (430 aa) |
| | recF | DNA replication and repair protein RecF; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP. (343 aa) |
| | ADU66128.1 | PFAM: Electron transfer flavoprotein alpha subunit; Electron transfer flavoprotein alpha/beta-subunit; KEGG: gur:Gura_1602 electron transfer flavoprotein, alpha subunit. (304 aa) |
| | ADU66131.1 | PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: chy:CHY_1350 butyryl-CoA dehydrogenase. (382 aa) |
| | ADU66139.1 | KEGG: gur:Gura_1596 hypothetical protein. (183 aa) |
| | ADU66142.1 | PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: ddf:DEFDS_1465 acyl-CoA dehydrogenase. (592 aa) |
| | ADU66145.1 | PFAM: AMP-dependent synthetase and ligase; KEGG: gur:Gura_1590 AMP-dependent synthetase and ligase. (611 aa) |
| | ADU66255.1 | KEGG: wsu:WS0166 carboxynorspermidine decarboxylase (NspC); TIGRFAM: carboxynorspermidine decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2. (377 aa) |
| | ADU66277.1 | Glutathione transferase; KEGG: sme:SMc02708 hypothetical protein; PFAM: Glutathione S-transferase domain. (320 aa) |
| | nfo | Apurinic endonuclease Apn1; Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin. (283 aa) |
| | ADU66358.1 | PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: geo:Geob_2694 phosphoesterase RecJ domain protein. (316 aa) |
| | nth | Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. (216 aa) |
| | rpsT | Ribosomal protein S20; Binds directly to 16S ribosomal RNA. (90 aa) |
| | ADU66384.1 | PFAM: cytochrome c biogenesis protein transmembrane region; KEGG: glo:Glov_2275 cytochrome c biogenesis protein transmembrane region. (238 aa) |
| | ADU66385.1 | Magnesium transporter; Acts as a magnesium transporter. (448 aa) |
| | ADU66390.1 | PFAM: Peptidase M16C associated domain protein; peptidase M16 domain protein; KEGG: nwa:Nwat_1021 peptidase M16C associated domain-containing protein. (987 aa) |
| | ADU66394.1 | PFAM: N-formylglutamate amidohydrolase; KEGG: tbd:Tbd_1455 N-formylglutamate amidohydrolase. (237 aa) |
| | ADU66440.1 | Helix-turn-helix domain protein; KEGG: dde:Dde_2500 XRE family transcriptional regulator; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein. (71 aa) |
| | priA | Primosomal protein N; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily. (694 aa) |
| | ADU66476.1 | PFAM: Silent information regulator protein Sir2; KEGG: gpb:HDN1F_12980 NAD-dependent deacetylase 2. (260 aa) |
| | ADU66479.1 | KEGG: bpf:BpOF4_10105 TraB family protein; TIGRFAM: TraB family protein; PFAM: TraB determinant protein. (411 aa) |
| | rpmB | Ribosomal protein L28; Manually curated; TIGRFAM: ribosomal protein L28; KEGG: afw:Anae109_2515 50S ribosomal protein L28; PFAM: ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family. (61 aa) |
| | ADU66483.1 | KEGG: mem:Memar_0061 DNA repair protein RadC; TIGRFAM: DNA repair protein RadC; PFAM: DNA repair protein RadC; Belongs to the UPF0758 family. (216 aa) |
| | rpsB | Ribosomal protein S2; KEGG: gur:Gura_3733 30S ribosomal protein S2; TIGRFAM: ribosomal protein S2; PFAM: ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. (256 aa) |
| | ADU66496.1 | Histone family protein DNA-binding protein; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. (93 aa) |
| | ADU66505.1 | KEGG: mxa:MXAN_3783 hexapaptide repeat-containing transferase. (174 aa) |
| | ADU66534.1 | PFAM: protein of unknown function DUF1504; KEGG: caa:Caka_1379 protein of unknown function DUF1504. (604 aa) |
| | ADU66586.1 | TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; KEGG: plt:Plut_1549 O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein. (430 aa) |
| | ADU66629.1 | PFAM: AMMECR1 domain protein; KEGG: dma:DMR_28890 hypothetical protein. (183 aa) |
| | ADU66652.1 | KEGG: rce:RC1_0804 TPR domain protein; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; SMART: Tetratricopeptide repeat. (400 aa) |
| | ADU66657.1 | Hypothetical protein; KEGG: rce:RC1_0799 TonB system biopolymer transport component, putative. (278 aa) |
| | recR | Zinc finger C4-type, RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. (208 aa) |
| | ADU66666.1 | Uncharacterized protein family UPF0133; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. (109 aa) |
| | rplL | Ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family. (126 aa) |
| | rplJ | Ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. (175 aa) |
| | rplA | Ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. (230 aa) |
| | rplK | Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. (141 aa) |
| | rpmG | KEGG: dap:Dacet_0358 50S ribosomal protein L33; TIGRFAM: ribosomal protein L33; PFAM: ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family. (49 aa) |
| | rnhA | Ribonuclease H; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. (152 aa) |
| | ADU66714.1 | KEGG: dap:Dacet_1134 glutathione-dependent formaldehyde-activating GFA; manually curated; PFAM: glutathione-dependent formaldehyde-activating GFA. (132 aa) |
| | ADU66730.1 | Magnesium transporter; Acts as a magnesium transporter. (463 aa) |
| | ADU66770.1 | PFAM: ABC-1 domain-containing protein; KEGG: ote:Oter_4049 hypothetical protein. (553 aa) |
| | ADU66797.1 | Homocitrate synthase; KEGG: dap:Dacet_1054 pyruvate carboxyltransferase; TIGRFAM: homocitrate synthase; PFAM: pyruvate carboxyltransferase; Belongs to the alpha-IPM synthase/homocitrate synthase family. (377 aa) |
| | rpsI | PFAM: ribosomal protein S9; KEGG: csc:Csac_1343 30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. (129 aa) |
| | rplM | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. (141 aa) |
| | ADU66830.1 | KEGG: ttr:Tter_0083 tetratricopeptide TPR_2 repeat protein; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; SMART: Tetratricopeptide repeat. (1017 aa) |
| | purF | Amidophosphoribosyltransferase; Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine. (462 aa) |
| | ADU66873.1 | PFAM: type II and III secretion system protein; KEGG: hha:Hhal_0329 pilus (MSHA type) biogenesis protein MshL; Belongs to the bacterial secretin family. (683 aa) |
| | selO | Protein of unknown function UPF0061; Catalyzes the transfer of adenosine 5'-monophosphate (AMP) to Ser, Thr or Tyr residues of target proteins (AMPylation). Belongs to the SELO family. (480 aa) |
| | topA | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] (768 aa) |
| | ADU66947.1 | PFAM: GCN5-related N-acetyltransferase; KEGG: pca:Pcar_2325 acetyltransferase. (157 aa) |
| | rpsO | Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. (89 aa) |
| | rplU | Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. (102 aa) |
| | ADU66958.1 | KEGG: dap:Dacet_2921 transcriptional regulator, TraR/DksA family. (119 aa) |
| | ADU67001.1 | SMART: helicase c2; DEAD-like helicase; KEGG: ppd:Ppro_0509 helicase C2. (697 aa) |
| | ADU67004.1 | KEGG: rcp:RCAP_rcc00930 hypothetical protein. (93 aa) |
| | ADU67023.1 | PFAM: nitroreductase; KEGG: bmr:BMI_II493 hypothetical protein. (197 aa) |
| | rpmE | Ribosomal protein L31; Binds the 23S rRNA. (68 aa) |
| | hemA | glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA). (419 aa) |
| | ADU67060.1 | KEGG: dhd:Dhaf_0643 protein of unknown function DUF262; manually curated; PFAM: protein of unknown function DUF262. (349 aa) |
| | ADU67109.1 | TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; KEGG: ddf:DEFDS_0208 O-acetylhomoserine (thiol)-lyase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein. (426 aa) |
| | rpmI | KEGG: pca:Pcar_1420 ribosomal protein L35; TIGRFAM: ribosomal protein L35; PFAM: Ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family. (65 aa) |
| | rplT | Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. (117 aa) |
| | purD | TIGRFAM: phosphoribosylamine/glycine ligase; KEGG: gsu:GSU0610 phosphoribosylamine--glycine ligase; PFAM: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; Phosphoribosylglycinamide synthetase, N-domain; Phosphoribosylglycinamide synthetase, C-domain; Belongs to the GARS family. (423 aa) |
| | ADU67191.1 | KEGG: dol:Dole_2418 TPR repeat-containing protein; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; SMART: Tetratricopeptide repeat. (653 aa) |
| | ADU67221.1 | PFAM: class II aldolase/adducin family protein; KEGG: tjr:TherJR_2057 class II aldolase/adducin family protein. (190 aa) |
| | ADU67265.1 | PFAM: Patatin; surface antigen (D15); KEGG: cti:RALTA_B2273 putative esterase of the alpha-beta hydrolase superfamily, patatin-like phospholipase domain; putative exported protein. (735 aa) |
| | rpsP | KEGG: afl:Aflv_1764 30S ribosomal protein S16; TIGRFAM: ribosomal protein S16; PFAM: ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family. (95 aa) |
| | rplS | Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. (117 aa) |
| | ADU67283.1 | PFAM: protein of unknown function DUF134; KEGG: glo:Glov_2602 protein of unknown function DUF134. (105 aa) |
| | ADU64769.1 | PFAM: GCN5-related N-acetyltransferase; KEGG: cdi:DIP1949 putative acetyltransferase. (187 aa) |
| | ADU64778.1 | PFAM: pyruvate carboxyltransferase; KEGG: lic:LIC10409 2-isopropylmalate synthase; Belongs to the alpha-IPM synthase/homocitrate synthase family. (407 aa) |
| | lysA | Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine. (414 aa) |
| | ADU64824.1 | KEGG: wsu:WS1632 hypothetical protein; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; SMART: Tetratricopeptide repeat. (605 aa) |
| | ADU64837.1 | Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily. (450 aa) |
| | ADU64839.1 | Cation diffusion facilitator family transporter; KEGG: pca:Pcar_1509 putative transport system permease protein; TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family. (319 aa) |
| | ADU64873.1 | KEGG: dvm:DvMF_0050 RNP-1 like RNA-binding protein; PFAM: RNP-1 like RNA-binding protein; SMART: RNP-1 like RNA-binding protein. (83 aa) |
| | ADU64874.1 | KEGG: dvm:DvMF_0050 RNP-1 like RNA-binding protein; PFAM: RNP-1 like RNA-binding protein; SMART: RNP-1 like RNA-binding protein. (84 aa) |
| | ADU64892.1 | PFAM: protein of unknown function UPF0047; KEGG: ddf:DEFDS_0856 hypothetical protein. (131 aa) |
| | dnaG | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. (601 aa) |
| | ADU64931.1 | PFAM: aminotransferase class V; KEGG: ddf:DEFDS_2124 serine--glyoxylate transaminase. (383 aa) |
| | ADU64962.1 | Hypothetical protein; KEGG: cac:CA_C1625 phosphoserine phosphatase family protein. (230 aa) |
| | ADU64964.1 | TIGRFAM: 2-isopropylmalate synthase/homocitrate synthase family protein; KEGG: gsu:GSU1798 putative alpha-isopropylmalate/homocitrate synthase family transferase; PFAM: LeuA allosteric (dimerisation) domain-containing protein; pyruvate carboxyltransferase; Belongs to the alpha-IPM synthase/homocitrate synthase family. (522 aa) |
| | ADU65014.1 | ADP-ribosyl-(dinitrogen reductase) hydrolase; TIGRFAM: ADP-ribosyl-[dinitrogen reductase] hydrolase; KEGG: dap:Dacet_1043 ADP-ribosyl-(dinitrogen reductase) hydrolase; PFAM: ADP-ribosylation/Crystallin J1. (305 aa) |
| | ADU65026.1 | KEGG: dds:Ddes_2020 RNP-1 like RNA-binding protein; PFAM: RNP-1 like RNA-binding protein; SMART: RNP-1 like RNA-binding protein. (82 aa) |
| | ADU65030.1 | PFAM: Cupin 2 conserved barrel domain protein; KEGG: dsa:Desal_0547 cupin 2 conserved barrel domain protein. (113 aa) |
| | ADU65035.1 | KEGG: pca:Pcar_1329 beta-lactamase superfamily hydrolase. (258 aa) |
| | ADU65042.1 | KEGG: sde:Sde_3742 hypothetical protein. (273 aa) |
| | leuA | 2-isopropylmalate synthase; Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3- hydroxy-4-methylpentanoate (2-isopropylmalate); Belongs to the alpha-IPM synthase/homocitrate synthase family. LeuA type 1 subfamily. (524 aa) |
| | ADU65078.1 | PFAM: aminotransferase class V; KEGG: aeh:Mlg_0624 aminotransferase, class V. (377 aa) |
| | ADU65083.1 | KEGG: rce:RC1_0628 5-oxoprolinase; PFAM: Hydantoinase B/oxoprolinase; Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase domain protein. (1204 aa) |
| | rpsL | Ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. (124 aa) |
| | rpsG | Ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. (157 aa) |
| | ADU65239.1 | PFAM: Patatin; KEGG: pca:Pcar_0066 alpha-beta hydrolase family esterase. (309 aa) |
| | ADU65251.1 | PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; KEGG: aba:Acid345_4642 putative 6-pyruvoyl tetrahydropterin synthase. (125 aa) |
| | rpmF | KEGG: pca:Pcar_1434 50S ribosomal protein L32; TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein; Belongs to the bacterial ribosomal protein bL32 family. (59 aa) |
| | hpf | Ribosomal subunit interface protein; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth. (186 aa) |
