17 items (Oryza barthii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0D3ELE7	Uncharacterized protein; Belongs to the MIP/aquaporin (TC 1.A.8) family. (256 aa)
	A0A0D3EVT6	Uncharacterized protein. (716 aa)
	A0A0D3F2M8	Uncharacterized protein. (281 aa)
	A0A0D3F2T9	Uncharacterized protein; Belongs to the MIP/aquaporin (TC 1.A.8) family. (284 aa)
	A0A0D3F2U8	RING-type E3 ubiquitin transferase. (535 aa)
	A0A0D3F7E7	PPM-type phosphatase domain-containing protein. (545 aa)
	A0A0D3FY14	Uncharacterized protein; Belongs to the MIP/aquaporin (TC 1.A.8) family. (320 aa)
	A0A0D3G4S5	Uncharacterized protein; Belongs to the MIP/aquaporin (TC 1.A.8) family. (251 aa)
	A0A0D3GQH4	Uncharacterized protein; Belongs to the MIP/aquaporin (TC 1.A.8) family. (322 aa)
	A0A0D3GZT8	Cytochrome b5 heme-binding domain-containing protein; Belongs to the cytochrome b5 family. (95 aa)
	A0A0D3H5G4	Cytochrome b5 heme-binding domain-containing protein; Belongs to the cytochrome b5 family. (86 aa)
	A0A0D3H7M1	Uncharacterized protein. (89 aa)
	A0A0D3H9X8	Uncharacterized protein. (252 aa)
	A0A0D3HM90	Uncharacterized protein. (832 aa)
	A0A0D3HMB5	Uncharacterized protein. (1902 aa)
	A0A0D3HMC4	Uncharacterized protein. (850 aa)
	A0A0D3HSF3	Uncharacterized protein; Belongs to the MIP/aquaporin (TC 1.A.8) family. (196 aa)

Your Current Organism:

Oryza barthii

NCBI taxonomy Id: 65489
Other names: African wild rice, O. barthii, Oryza barthii A.Chev., Oryza breviligulata, Oryza breviligulata A.Chev. & Roehr.

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0D3F2M8	A0A0D3HM90	Uncharacterized protein.	Uncharacterized protein.	0.549
A0A0D3F2M8	A0A0D3HMB5	Uncharacterized protein.	Uncharacterized protein.	0.549
A0A0D3F2M8	A0A0D3HMC4	Uncharacterized protein.	Uncharacterized protein.	0.549
A0A0D3F2U8	A0A0D3H7M1	RING-type E3 ubiquitin transferase.	Uncharacterized protein.	0.405
A0A0D3F7E7	A0A0D3HM90	PPM-type phosphatase domain-containing protein.	Uncharacterized protein.	0.414
A0A0D3H7M1	A0A0D3F2U8	Uncharacterized protein.	RING-type E3 ubiquitin transferase.	0.405
A0A0D3H7M1	A0A0D3HM90	Uncharacterized protein.	Uncharacterized protein.	0.549
A0A0D3H7M1	A0A0D3HMB5	Uncharacterized protein.	Uncharacterized protein.	0.549
A0A0D3H7M1	A0A0D3HMC4	Uncharacterized protein.	Uncharacterized protein.	0.549
A0A0D3H9X8	A0A0D3HM90	Uncharacterized protein.	Uncharacterized protein.	0.549
A0A0D3H9X8	A0A0D3HMB5	Uncharacterized protein.	Uncharacterized protein.	0.549
A0A0D3H9X8	A0A0D3HMC4	Uncharacterized protein.	Uncharacterized protein.	0.549
A0A0D3HM90	A0A0D3F2M8	Uncharacterized protein.	Uncharacterized protein.	0.549
A0A0D3HM90	A0A0D3F7E7	Uncharacterized protein.	PPM-type phosphatase domain-containing protein.	0.414
A0A0D3HM90	A0A0D3H7M1	Uncharacterized protein.	Uncharacterized protein.	0.549
A0A0D3HM90	A0A0D3H9X8	Uncharacterized protein.	Uncharacterized protein.	0.549
A0A0D3HMB5	A0A0D3F2M8	Uncharacterized protein.	Uncharacterized protein.	0.549
A0A0D3HMB5	A0A0D3H7M1	Uncharacterized protein.	Uncharacterized protein.	0.549
A0A0D3HMB5	A0A0D3H9X8	Uncharacterized protein.	Uncharacterized protein.	0.549
A0A0D3HMC4	A0A0D3F2M8	Uncharacterized protein.	Uncharacterized protein.	0.549