11 items (Oryza barthii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0D3EIU9	Uncharacterized protein; Belongs to the MIP/aquaporin (TC 1.A.8) family. (284 aa)
	A0A0D3ESA0	PHD-type domain-containing protein. (1890 aa)
	A0A0D3F8M8	Uncharacterized protein; Belongs to the MIP/aquaporin (TC 1.A.8) family. (289 aa)
	A0A0D3FC91	Uncharacterized protein; Belongs to the MIP/aquaporin (TC 1.A.8) family. (261 aa)
	A0A0D3FRP7	Uncharacterized protein; Belongs to the MIP/aquaporin (TC 1.A.8) family. (280 aa)
	A0A0D3FYV3	Uncharacterized protein; Belongs to the MIP/aquaporin (TC 1.A.8) family. (288 aa)
	A0A0D3G4C5	Uncharacterized protein; Belongs to the MIP/aquaporin (TC 1.A.8) family. (341 aa)
	A0A0D3GQH7	Uncharacterized protein; Belongs to the MIP/aquaporin (TC 1.A.8) family. (283 aa)
	A0A0D3H8W6	Bromo domain-containing protein. (1191 aa)
	A0A0D3H9I1	Uncharacterized protein; Belongs to the MIP/aquaporin (TC 1.A.8) family. (290 aa)
	A0A0D3HFK3	Uncharacterized protein; Belongs to the MIP/aquaporin (TC 1.A.8) family. (276 aa)

Your Current Organism:

Oryza barthii

NCBI taxonomy Id: 65489
Other names: African wild rice, O. barthii, Oryza barthii A.Chev., Oryza breviligulata, Oryza breviligulata A.Chev. & Roehr.

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0D3EIU9	A0A0D3ESA0	Uncharacterized protein; Belongs to the MIP/aquaporin (TC 1.A.8) family.	PHD-type domain-containing protein.	0.733
A0A0D3EIU9	A0A0D3F8M8	Uncharacterized protein; Belongs to the MIP/aquaporin (TC 1.A.8) family.	Uncharacterized protein; Belongs to the MIP/aquaporin (TC 1.A.8) family.	0.534
A0A0D3EIU9	A0A0D3FC91	Uncharacterized protein; Belongs to the MIP/aquaporin (TC 1.A.8) family.	Uncharacterized protein; Belongs to the MIP/aquaporin (TC 1.A.8) family.	0.542
A0A0D3EIU9	A0A0D3FRP7	Uncharacterized protein; Belongs to the MIP/aquaporin (TC 1.A.8) family.	Uncharacterized protein; Belongs to the MIP/aquaporin (TC 1.A.8) family.	0.524
A0A0D3EIU9	A0A0D3FYV3	Uncharacterized protein; Belongs to the MIP/aquaporin (TC 1.A.8) family.	Uncharacterized protein; Belongs to the MIP/aquaporin (TC 1.A.8) family.	0.565
A0A0D3EIU9	A0A0D3GQH7	Uncharacterized protein; Belongs to the MIP/aquaporin (TC 1.A.8) family.	Uncharacterized protein; Belongs to the MIP/aquaporin (TC 1.A.8) family.	0.568
A0A0D3EIU9	A0A0D3H8W6	Uncharacterized protein; Belongs to the MIP/aquaporin (TC 1.A.8) family.	Bromo domain-containing protein.	0.733
A0A0D3EIU9	A0A0D3H9I1	Uncharacterized protein; Belongs to the MIP/aquaporin (TC 1.A.8) family.	Uncharacterized protein; Belongs to the MIP/aquaporin (TC 1.A.8) family.	0.574
A0A0D3ESA0	A0A0D3EIU9	PHD-type domain-containing protein.	Uncharacterized protein; Belongs to the MIP/aquaporin (TC 1.A.8) family.	0.733
A0A0D3ESA0	A0A0D3F8M8	PHD-type domain-containing protein.	Uncharacterized protein; Belongs to the MIP/aquaporin (TC 1.A.8) family.	0.733
A0A0D3ESA0	A0A0D3FC91	PHD-type domain-containing protein.	Uncharacterized protein; Belongs to the MIP/aquaporin (TC 1.A.8) family.	0.733
A0A0D3ESA0	A0A0D3FRP7	PHD-type domain-containing protein.	Uncharacterized protein; Belongs to the MIP/aquaporin (TC 1.A.8) family.	0.733
A0A0D3ESA0	A0A0D3FYV3	PHD-type domain-containing protein.	Uncharacterized protein; Belongs to the MIP/aquaporin (TC 1.A.8) family.	0.733
A0A0D3ESA0	A0A0D3G4C5	PHD-type domain-containing protein.	Uncharacterized protein; Belongs to the MIP/aquaporin (TC 1.A.8) family.	0.733
A0A0D3ESA0	A0A0D3GQH7	PHD-type domain-containing protein.	Uncharacterized protein; Belongs to the MIP/aquaporin (TC 1.A.8) family.	0.733
A0A0D3ESA0	A0A0D3H9I1	PHD-type domain-containing protein.	Uncharacterized protein; Belongs to the MIP/aquaporin (TC 1.A.8) family.	0.733
A0A0D3ESA0	A0A0D3HFK3	PHD-type domain-containing protein.	Uncharacterized protein; Belongs to the MIP/aquaporin (TC 1.A.8) family.	0.733
A0A0D3F8M8	A0A0D3EIU9	Uncharacterized protein; Belongs to the MIP/aquaporin (TC 1.A.8) family.	Uncharacterized protein; Belongs to the MIP/aquaporin (TC 1.A.8) family.	0.534
A0A0D3F8M8	A0A0D3ESA0	Uncharacterized protein; Belongs to the MIP/aquaporin (TC 1.A.8) family.	PHD-type domain-containing protein.	0.733
A0A0D3F8M8	A0A0D3G4C5	Uncharacterized protein; Belongs to the MIP/aquaporin (TC 1.A.8) family.	Uncharacterized protein; Belongs to the MIP/aquaporin (TC 1.A.8) family.	0.534