(36 nodes) Synthesis of PIPs at the plasma membrane, and Phosphatidylinositol-mediated signaling network (Oryza barthii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0D3EK30	G-patch domain-containing protein. (450 aa)
	A0A0D3EKE6	IPPc domain-containing protein. (536 aa)
	A0A0D3ELH1	Ubiquitin-like domain-containing protein; Belongs to the PI3/PI4-kinase family. (567 aa)
	A0A0D3EM81	PI3K/PI4K domain-containing protein. (498 aa)
	A0A0D3F3V1	Uncharacterized protein; Belongs to the PI3/PI4-kinase family. (564 aa)
	A0A0D3F553	IPPc domain-containing protein. (806 aa)
	A0A0D3F6C4	SAC domain-containing protein. (615 aa)
	A0A0D3FC85	Phosphatidylinositol 4-phosphate 5-kinase. (824 aa)
	A0A0D3FFZ7	IPPc domain-containing protein. (564 aa)
	A0A0D3FGH6	PIPK domain-containing protein. (505 aa)
	A0A0D3FH70	Phosphoinositide phospholipase C. (594 aa)
	A0A0D3FH76	Uncharacterized protein. (670 aa)
	A0A0D3FIM0	PIPK domain-containing protein. (565 aa)
	A0A0D3FLG2	IPPc domain-containing protein. (310 aa)
	A0A0D3FMX5	PIPK domain-containing protein. (827 aa)
	A0A0D3FN04	Phosphatidylinositol 4-phosphate 5-kinase. (747 aa)
	A0A0D3FN49	Uncharacterized protein; Belongs to the PI3/PI4-kinase family. (1674 aa)
	A0A0D3FWU2	Uncharacterized protein. (660 aa)
	A0A0D3FX86	Uncharacterized protein. (96 aa)
	A0A0D3G0L7	Uncharacterized protein. (627 aa)
	A0A0D3G1F4	PI3K/PI4K domain-containing protein. (626 aa)
	A0A0D3G239	PIPK domain-containing protein. (1381 aa)
	A0A0D3G2S8	Phosphoinositide phospholipase C. (569 aa)
	A0A0D3GBI9	Uncharacterized protein. (581 aa)
	A0A0D3GG85	Uncharacterized protein; Belongs to the PI3/PI4-kinase family. (568 aa)
	A0A0D3GUJ0	PIPK domain-containing protein. (646 aa)
	A0A0D3GVB8	Phosphoinositide phospholipase C. (598 aa)
	A0A0D3H0E7	IPPc domain-containing protein. (445 aa)
	A0A0D3H0G7	PIPK domain-containing protein. (1487 aa)
	A0A0D3H6I1	IPPc domain-containing protein. (337 aa)
	A0A0D3HI43	PIPK domain-containing protein. (583 aa)
	A0A0D3HI55	ANK_REP_REGION domain-containing protein. (729 aa)
	A0A0D3HJG7	Uncharacterized protein; Belongs to the PI3/PI4-kinase family. (1264 aa)
	A0A0D3HKY9	SAC domain-containing protein. (606 aa)
	A0A0D3HRA5	PIPK domain-containing protein. (884 aa)
	A0A0D3HVQ2	Phosphoinositide phospholipase C. (477 aa)

Your Current Organism:

Oryza barthii

NCBI taxonomy Id: 65489
Other names: African wild rice, O. barthii, Oryza barthii A.Chev., Oryza breviligulata, Oryza breviligulata A.Chev. & Roehr.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0D3EK30	A0A0D3ELH1	G-patch domain-containing protein.	Ubiquitin-like domain-containing protein; Belongs to the PI3/PI4-kinase family.	0.888
A0A0D3EK30	A0A0D3EM81	G-patch domain-containing protein.	PI3K/PI4K domain-containing protein.	0.472
A0A0D3EK30	A0A0D3F3V1	G-patch domain-containing protein.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.888
A0A0D3EK30	A0A0D3F6C4	G-patch domain-containing protein.	SAC domain-containing protein.	0.557
A0A0D3EK30	A0A0D3FH70	G-patch domain-containing protein.	Phosphoinositide phospholipase C.	0.696
A0A0D3EK30	A0A0D3FH76	G-patch domain-containing protein.	Uncharacterized protein.	0.557
A0A0D3EK30	A0A0D3FN49	G-patch domain-containing protein.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.808
A0A0D3EK30	A0A0D3FWU2	G-patch domain-containing protein.	Uncharacterized protein.	0.472
A0A0D3EK30	A0A0D3FX86	G-patch domain-containing protein.	Uncharacterized protein.	0.696
A0A0D3EK30	A0A0D3G1F4	G-patch domain-containing protein.	PI3K/PI4K domain-containing protein.	0.472
A0A0D3EK30	A0A0D3G239	G-patch domain-containing protein.	PIPK domain-containing protein.	0.406
A0A0D3EK30	A0A0D3G2S8	G-patch domain-containing protein.	Phosphoinositide phospholipase C.	0.696
A0A0D3EK30	A0A0D3GBI9	G-patch domain-containing protein.	Uncharacterized protein.	0.888
A0A0D3EK30	A0A0D3GG85	G-patch domain-containing protein.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.888
A0A0D3EK30	A0A0D3GVB8	G-patch domain-containing protein.	Phosphoinositide phospholipase C.	0.696
A0A0D3EK30	A0A0D3H0G7	G-patch domain-containing protein.	PIPK domain-containing protein.	0.406
A0A0D3EK30	A0A0D3HJG7	G-patch domain-containing protein.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.807
A0A0D3EK30	A0A0D3HKY9	G-patch domain-containing protein.	SAC domain-containing protein.	0.557
A0A0D3EK30	A0A0D3HVQ2	G-patch domain-containing protein.	Phosphoinositide phospholipase C.	0.696
A0A0D3EKE6	A0A0D3ELH1	IPPc domain-containing protein.	Ubiquitin-like domain-containing protein; Belongs to the PI3/PI4-kinase family.	0.792