30 items (Oryza barthii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0D3EWX1	RRM domain-containing protein. (417 aa)
	A0A0D3EZ40	Small nuclear ribonucleoprotein Sm D2. (105 aa)
	A0A0D3EZH7	Small nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. (132 aa)
	A0A0D3F050	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (176 aa)
	A0A0D3F0F6	CPSF_A domain-containing protein. (1234 aa)
	A0A0D3F0M8	TOG domain-containing protein. (1158 aa)
	A0A0D3F1G6	Sm domain-containing protein. (66 aa)
	A0A0D3F305	Ubiquitin-like domain-containing protein. (567 aa)
	A0A0D3F3D2	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. (228 aa)
	A0A0D3FCC2	Uncharacterized protein. (1066 aa)
	A0A0D3FG13	Small nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. (132 aa)
	A0A0D3FGJ2	Matrin-type domain-containing protein. (352 aa)
	A0A0D3FHE1	Uncharacterized protein. (231 aa)
	A0A0D3FI00	Uncharacterized protein. (441 aa)
	A0A0D3FJQ5	Small nuclear ribonucleoprotein G. (80 aa)
	A0A0D3FNA3	Matrin-type domain-containing protein. (461 aa)
	A0A0D3FQJ1	RRM domain-containing protein. (130 aa)
	A0A0D3FWW6	Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family. (96 aa)
	A0A0D3G1A3	Uncharacterized protein. (110 aa)
	A0A0D3G5X6	Small nuclear ribonucleoprotein Sm D2. (106 aa)
	A0A0D3GIS1	Uncharacterized protein. (74 aa)
	A0A0D3GMP7	Uncharacterized protein. (143 aa)
	A0A0D3GNG7	CPSF_A domain-containing protein. (1356 aa)
	A0A0D3GTD9	Small nuclear ribonucleoprotein G. (81 aa)
	A0A0D3GWD6	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (215 aa)
	A0A0D3GYC8	Splicing factor subunit; Belongs to the SF3B5 family. (87 aa)
	A0A0D3H0T5	Splicing factor subunit; Belongs to the SF3B5 family. (77 aa)
	A0A0D3HEC6	Uncharacterized protein. (134 aa)
	A0A0D3HM23	Uncharacterized protein. (104 aa)
	A0A0D3HPK6	Sm domain-containing protein. (86 aa)

Your Current Organism:

Oryza barthii

NCBI taxonomy Id: 65489
Other names: African wild rice, O. barthii, Oryza barthii A.Chev., Oryza breviligulata, Oryza breviligulata A.Chev. & Roehr.

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0D3EWX1	A0A0D3EZ40	RRM domain-containing protein.	Small nuclear ribonucleoprotein Sm D2.	0.948
A0A0D3EWX1	A0A0D3EZH7	RRM domain-containing protein.	Small nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome.	0.947
A0A0D3EWX1	A0A0D3F050	RRM domain-containing protein.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.957
A0A0D3EWX1	A0A0D3F0F6	RRM domain-containing protein.	CPSF_A domain-containing protein.	0.993
A0A0D3EWX1	A0A0D3F0M8	RRM domain-containing protein.	TOG domain-containing protein.	0.979
A0A0D3EWX1	A0A0D3F1G6	RRM domain-containing protein.	Sm domain-containing protein.	0.945
A0A0D3EWX1	A0A0D3F305	RRM domain-containing protein.	Ubiquitin-like domain-containing protein.	0.946
A0A0D3EWX1	A0A0D3F3D2	RRM domain-containing protein.	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.	0.982
A0A0D3EWX1	A0A0D3FCC2	RRM domain-containing protein.	Uncharacterized protein.	0.995
A0A0D3EWX1	A0A0D3FG13	RRM domain-containing protein.	Small nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome.	0.947
A0A0D3EWX1	A0A0D3FGJ2	RRM domain-containing protein.	Matrin-type domain-containing protein.	0.991
A0A0D3EWX1	A0A0D3FHE1	RRM domain-containing protein.	Uncharacterized protein.	0.964
A0A0D3EWX1	A0A0D3FI00	RRM domain-containing protein.	Uncharacterized protein.	0.964
A0A0D3EWX1	A0A0D3FJQ5	RRM domain-containing protein.	Small nuclear ribonucleoprotein G.	0.948
A0A0D3EWX1	A0A0D3FNA3	RRM domain-containing protein.	Matrin-type domain-containing protein.	0.985
A0A0D3EWX1	A0A0D3FQJ1	RRM domain-containing protein.	RRM domain-containing protein.	0.993
A0A0D3EWX1	A0A0D3FWW6	RRM domain-containing protein.	Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family.	0.967
A0A0D3EWX1	A0A0D3G1A3	RRM domain-containing protein.	Uncharacterized protein.	0.991
A0A0D3EWX1	A0A0D3G5X6	RRM domain-containing protein.	Small nuclear ribonucleoprotein Sm D2.	0.948
A0A0D3EWX1	A0A0D3GIS1	RRM domain-containing protein.	Uncharacterized protein.	0.979