(10 nodes) Regulatory protein NPR, central domain, and Seed dormancy control network (Oryza barthii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0D3EKL9	ANK_REP_REGION domain-containing protein. (416 aa)
	A0A0D3EMF9	Uncharacterized protein. (341 aa)
	A0A0D3EUG3	Uncharacterized protein. (624 aa)
	A0A0D3EYN3	ANK_REP_REGION domain-containing protein. (420 aa)
	A0A0D3FHT6	Uncharacterized protein. (307 aa)
	A0A0D3FM62	Uncharacterized protein. (585 aa)
	A0A0D3G046	Uncharacterized protein. (397 aa)
	A0A0D3GV70	Uncharacterized protein. (318 aa)
	A0A0D3HI21	BTB domain-containing protein. (476 aa)
	A0A0D3HIC2	Uncharacterized protein. (464 aa)

Your Current Organism:

Oryza barthii

NCBI taxonomy Id: 65489
Other names: African wild rice, O. barthii, Oryza barthii A.Chev., Oryza breviligulata, Oryza breviligulata A.Chev. & Roehr.

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0D3EKL9	A0A0D3EMF9	ANK_REP_REGION domain-containing protein.	Uncharacterized protein.	0.938
A0A0D3EKL9	A0A0D3EUG3	ANK_REP_REGION domain-containing protein.	Uncharacterized protein.	0.958
A0A0D3EKL9	A0A0D3EYN3	ANK_REP_REGION domain-containing protein.	ANK_REP_REGION domain-containing protein.	0.858
A0A0D3EKL9	A0A0D3FHT6	ANK_REP_REGION domain-containing protein.	Uncharacterized protein.	0.942
A0A0D3EKL9	A0A0D3FM62	ANK_REP_REGION domain-containing protein.	Uncharacterized protein.	0.973
A0A0D3EKL9	A0A0D3G046	ANK_REP_REGION domain-containing protein.	Uncharacterized protein.	0.964
A0A0D3EKL9	A0A0D3GV70	ANK_REP_REGION domain-containing protein.	Uncharacterized protein.	0.904
A0A0D3EKL9	A0A0D3HI21	ANK_REP_REGION domain-containing protein.	BTB domain-containing protein.	0.858
A0A0D3EKL9	A0A0D3HIC2	ANK_REP_REGION domain-containing protein.	Uncharacterized protein.	0.873
A0A0D3EMF9	A0A0D3EKL9	Uncharacterized protein.	ANK_REP_REGION domain-containing protein.	0.938
A0A0D3EMF9	A0A0D3EUG3	Uncharacterized protein.	Uncharacterized protein.	0.920
A0A0D3EMF9	A0A0D3EYN3	Uncharacterized protein.	ANK_REP_REGION domain-containing protein.	0.898
A0A0D3EMF9	A0A0D3FM62	Uncharacterized protein.	Uncharacterized protein.	0.918
A0A0D3EMF9	A0A0D3HI21	Uncharacterized protein.	BTB domain-containing protein.	0.897
A0A0D3EUG3	A0A0D3EKL9	Uncharacterized protein.	ANK_REP_REGION domain-containing protein.	0.958
A0A0D3EUG3	A0A0D3EMF9	Uncharacterized protein.	Uncharacterized protein.	0.920
A0A0D3EUG3	A0A0D3EYN3	Uncharacterized protein.	ANK_REP_REGION domain-containing protein.	0.787
A0A0D3EUG3	A0A0D3FHT6	Uncharacterized protein.	Uncharacterized protein.	0.918
A0A0D3EUG3	A0A0D3FM62	Uncharacterized protein.	Uncharacterized protein.	0.936
A0A0D3EUG3	A0A0D3G046	Uncharacterized protein.	Uncharacterized protein.	0.901