(47 nodes) Alanine, aspartate and glutamate metabolism, and Aldehyde dehydrogenase family network (Oryza barthii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0D3EQ52	ELFV_dehydrog domain-containing protein; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. (606 aa)
	A0A0D3ESJ1	Glutamine amidotransferase type-2 domain-containing protein. (2157 aa)
	A0A0D3EUA5	Uncharacterized protein. (601 aa)
	A0A0D3EV89	DAO domain-containing protein. (416 aa)
	A0A0D3EW86	Delta-1-pyrroline-5-carboxylate synthase; P5CS plays a key role in proline biosynthesis, leading to osmoregulation in plants; In the N-terminal section; belongs to the glutamate 5- kinase family. (700 aa)
	A0A0D3EZQ7	Uncharacterized protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (483 aa)
	A0A0D3EZY4	tRNA-synt_1c domain-containing protein; Belongs to the class-I aminoacyl-tRNA synthetase family. (566 aa)
	A0A0D3F3L2	NADPH:adrenodoxin oxidoreductase, mitochondrial. (499 aa)
	A0A0D3F646	Uncharacterized protein. (486 aa)
	A0A0D3F876	Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. (464 aa)
	A0A0D3F898	Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. (411 aa)
	A0A0D3FA19	Uncharacterized protein; Belongs to the aldehyde dehydrogenase family. (583 aa)
	A0A0D3FA68	Glutamine synthetase. (356 aa)
	A0A0D3FAM0	TPR_REGION domain-containing protein. (571 aa)
	A0A0D3FBB3	Uncharacterized protein. (1125 aa)
	A0A0D3FFM6	Glutamine synthetase. (349 aa)
	A0A0D3FFX9	Glutamate decarboxylase; Belongs to the group II decarboxylase family. (492 aa)
	A0A0D3FH80	Asparagine synthetase [glutamine-hydrolyzing]. (588 aa)
	A0A0D3FI88	Uncharacterized protein. (159 aa)
	A0A0D3FL12	Uncharacterized protein. (317 aa)
	A0A0D3FN75	Glutamine synthetase. (370 aa)
	A0A0D3FNC2	Glutamate decarboxylase; Belongs to the group II decarboxylase family. (435 aa)
	A0A0D3FQ37	Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. (443 aa)
	A0A0D3FWD9	Uncharacterized protein. (234 aa)
	A0A0D3FYG7	Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. (490 aa)
	A0A0D3FYJ4	Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. (411 aa)
	A0A0D3G103	Uncharacterized protein. (147 aa)
	A0A0D3G162	Glutamine synthetase. (447 aa)
	A0A0D3G8H3	Delta-1-pyrroline-5-carboxylate synthase; P5CS plays a key role in proline biosynthesis, leading to osmoregulation in plants; In the N-terminal section; belongs to the glutamate 5- kinase family. (726 aa)
	A0A0D3GA80	Aldedh domain-containing protein. (513 aa)
	A0A0D3GAL3	Glutamine amidotransferase type-2 domain-containing protein. (2088 aa)
	A0A0D3GDZ6	CN hydrolase domain-containing protein. (339 aa)
	A0A0D3GF43	Asparagine synthetase [glutamine-hydrolyzing]. (542 aa)
	A0A0D3GFE2	Uncharacterized protein. (607 aa)
	A0A0D3GR12	CN hydrolase domain-containing protein. (413 aa)
	A0A0D3GUI8	Glutamine amidotransferase type-2 domain-containing protein. (1496 aa)
	A0A0D3GXF1	Uncharacterized protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (504 aa)
	A0A0D3H165	Glutamate decarboxylase; Belongs to the group II decarboxylase family. (495 aa)
	A0A0D3H7C2	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family. (336 aa)
	A0A0D3HAH0	Uncharacterized protein. (467 aa)
	A0A0D3HBB9	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family. (140 aa)
	A0A0D3HD38	Uncharacterized protein. (523 aa)
	A0A0D3HGF1	Proline dehydrogenase; Converts proline to delta-1-pyrroline-5-carboxylate. (350 aa)
	A0A0D3HJ19	Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. (494 aa)
	A0A0D3HLR7	Uncharacterized protein. (449 aa)
	A0A0D3HS12	Aldedh domain-containing protein. (367 aa)
	A0A0D3HWD4	Uncharacterized protein. (485 aa)

Your Current Organism:

Oryza barthii

NCBI taxonomy Id: 65489
Other names: African wild rice, O. barthii, Oryza barthii A.Chev., Oryza breviligulata, Oryza breviligulata A.Chev. & Roehr.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0D3EQ52	A0A0D3ESJ1	ELFV_dehydrog domain-containing protein; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	Glutamine amidotransferase type-2 domain-containing protein.	0.991
A0A0D3EQ52	A0A0D3EV89	ELFV_dehydrog domain-containing protein; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	DAO domain-containing protein.	0.932
A0A0D3EQ52	A0A0D3EW86	ELFV_dehydrog domain-containing protein; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	Delta-1-pyrroline-5-carboxylate synthase; P5CS plays a key role in proline biosynthesis, leading to osmoregulation in plants; In the N-terminal section; belongs to the glutamate 5- kinase family.	0.958
A0A0D3EQ52	A0A0D3EZQ7	ELFV_dehydrog domain-containing protein; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	Uncharacterized protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	0.742
A0A0D3EQ52	A0A0D3EZY4	ELFV_dehydrog domain-containing protein; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	tRNA-synt_1c domain-containing protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.910
A0A0D3EQ52	A0A0D3F3L2	ELFV_dehydrog domain-containing protein; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	NADPH:adrenodoxin oxidoreductase, mitochondrial.	0.939
A0A0D3EQ52	A0A0D3F646	ELFV_dehydrog domain-containing protein; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	Uncharacterized protein.	0.685
A0A0D3EQ52	A0A0D3F876	ELFV_dehydrog domain-containing protein; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.	0.918
A0A0D3EQ52	A0A0D3F898	ELFV_dehydrog domain-containing protein; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	0.875
A0A0D3EQ52	A0A0D3FA19	ELFV_dehydrog domain-containing protein; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	Uncharacterized protein; Belongs to the aldehyde dehydrogenase family.	0.920
A0A0D3EQ52	A0A0D3FA68	ELFV_dehydrog domain-containing protein; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	Glutamine synthetase.	0.903
A0A0D3EQ52	A0A0D3FAM0	ELFV_dehydrog domain-containing protein; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	TPR_REGION domain-containing protein.	0.678
A0A0D3EQ52	A0A0D3FFM6	ELFV_dehydrog domain-containing protein; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	Glutamine synthetase.	0.951
A0A0D3EQ52	A0A0D3FFX9	ELFV_dehydrog domain-containing protein; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	Glutamate decarboxylase; Belongs to the group II decarboxylase family.	0.943
A0A0D3EQ52	A0A0D3FH80	ELFV_dehydrog domain-containing protein; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	Asparagine synthetase [glutamine-hydrolyzing].	0.778
A0A0D3EQ52	A0A0D3FI88	ELFV_dehydrog domain-containing protein; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	Uncharacterized protein.	0.742
A0A0D3EQ52	A0A0D3FN75	ELFV_dehydrog domain-containing protein; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	Glutamine synthetase.	0.951
A0A0D3EQ52	A0A0D3FNC2	ELFV_dehydrog domain-containing protein; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	Glutamate decarboxylase; Belongs to the group II decarboxylase family.	0.943
A0A0D3EQ52	A0A0D3FQ37	ELFV_dehydrog domain-containing protein; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	0.888
A0A0D3EQ52	A0A0D3FWD9	ELFV_dehydrog domain-containing protein; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	Uncharacterized protein.	0.943