13 items (Oryza barthii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0D3EMB8	Uncharacterized protein. (345 aa)
	A0A0D3F093	Uncharacterized protein. (85 aa)
	A0A0D3F5D8	Uncharacterized protein. (93 aa)
	A0A0D3FHX5	Uncharacterized protein. (337 aa)
	A0A0D3FR69	Uncharacterized protein. (126 aa)
	A0A0D3G8U0	Uncharacterized protein. (520 aa)
	A0A0D3GDA0	Metaxin; Involved in transport of proteins into the mitochondrion. Belongs to the metaxin family. (337 aa)
	A0A0D3H5Y5	Uncharacterized protein. (274 aa)
	A0A0D3HH71	HTH myb-type domain-containing protein. (872 aa)
	A0A0D3HJY4	Uncharacterized protein. (76 aa)
	A0A0D3HQF0	Protein kinase domain-containing protein. (1046 aa)
	A0A0D3HX57	Uncharacterized protein. (186 aa)
	A0A0D3HX59	Uncharacterized protein. (160 aa)

Your Current Organism:

Oryza barthii

NCBI taxonomy Id: 65489
Other names: African wild rice, O. barthii, Oryza barthii A.Chev., Oryza breviligulata, Oryza breviligulata A.Chev. & Roehr.

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0D3EMB8	A0A0D3F093	Uncharacterized protein.	Uncharacterized protein.	0.956
A0A0D3EMB8	A0A0D3F5D8	Uncharacterized protein.	Uncharacterized protein.	0.956
A0A0D3EMB8	A0A0D3FR69	Uncharacterized protein.	Uncharacterized protein.	0.537
A0A0D3EMB8	A0A0D3G8U0	Uncharacterized protein.	Uncharacterized protein.	0.896
A0A0D3EMB8	A0A0D3GDA0	Uncharacterized protein.	Metaxin; Involved in transport of proteins into the mitochondrion. Belongs to the metaxin family.	0.896
A0A0D3EMB8	A0A0D3H5Y5	Uncharacterized protein.	Uncharacterized protein.	0.781
A0A0D3EMB8	A0A0D3HH71	Uncharacterized protein.	HTH myb-type domain-containing protein.	0.896
A0A0D3EMB8	A0A0D3HJY4	Uncharacterized protein.	Uncharacterized protein.	0.956
A0A0D3EMB8	A0A0D3HQF0	Uncharacterized protein.	Protein kinase domain-containing protein.	0.896
A0A0D3EMB8	A0A0D3HX57	Uncharacterized protein.	Uncharacterized protein.	0.896
A0A0D3EMB8	A0A0D3HX59	Uncharacterized protein.	Uncharacterized protein.	0.896
A0A0D3F093	A0A0D3EMB8	Uncharacterized protein.	Uncharacterized protein.	0.956
A0A0D3F093	A0A0D3FHX5	Uncharacterized protein.	Uncharacterized protein.	0.956
A0A0D3F093	A0A0D3G8U0	Uncharacterized protein.	Uncharacterized protein.	0.797
A0A0D3F093	A0A0D3GDA0	Uncharacterized protein.	Metaxin; Involved in transport of proteins into the mitochondrion. Belongs to the metaxin family.	0.700
A0A0D3F093	A0A0D3H5Y5	Uncharacterized protein.	Uncharacterized protein.	0.536
A0A0D3F093	A0A0D3HH71	Uncharacterized protein.	HTH myb-type domain-containing protein.	0.797
A0A0D3F093	A0A0D3HQF0	Uncharacterized protein.	Protein kinase domain-containing protein.	0.797
A0A0D3F093	A0A0D3HX57	Uncharacterized protein.	Uncharacterized protein.	0.700
A0A0D3F093	A0A0D3HX59	Uncharacterized protein.	Uncharacterized protein.	0.700