(10 nodes) Respiratory chain complex III, and Cyclin, C-terminal domain network (Oryza barthii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0D3ETF0	Oxidored_q6 domain-containing protein; Belongs to the complex I 20 kDa subunit family. (199 aa)
	A0A0D3EUN7	Plus3 domain-containing protein. (895 aa)
	A0A0D3EYE2	Cytochrome c domain-containing protein. (304 aa)
	A0A0D3F5R1	Cytochrome b-c1 complex subunit Rieske, mitochondrial; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis. (272 aa)
	A0A0D3F648	UCR_hinge domain-containing protein. (141 aa)
	A0A0D3FBP1	Uncharacterized protein; Belongs to the cyclin family. (392 aa)
	A0A0D3FFD2	Uncharacterized protein; Belongs to the peptidase M16 family. (529 aa)
	A0A0D3FQF5	Cytochrome b-c1 complex subunit 7; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is part of the mitochondrial respiratory chain; Belongs to the UQCRB/QCR7 family. (126 aa)
	A0A0D3G7D9	Uncharacterized protein. (62 aa)
	A0A0D3GT98	Uncharacterized protein. (215 aa)

Your Current Organism:

Oryza barthii

NCBI taxonomy Id: 65489
Other names: African wild rice, O. barthii, Oryza barthii A.Chev., Oryza breviligulata, Oryza breviligulata A.Chev. & Roehr.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0D3ETF0	A0A0D3EUN7	Oxidored_q6 domain-containing protein; Belongs to the complex I 20 kDa subunit family.	Plus3 domain-containing protein.	0.995
A0A0D3ETF0	A0A0D3EYE2	Oxidored_q6 domain-containing protein; Belongs to the complex I 20 kDa subunit family.	Cytochrome c domain-containing protein.	0.985
A0A0D3ETF0	A0A0D3F5R1	Oxidored_q6 domain-containing protein; Belongs to the complex I 20 kDa subunit family.	Cytochrome b-c1 complex subunit Rieske, mitochondrial; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	0.938
A0A0D3ETF0	A0A0D3F648	Oxidored_q6 domain-containing protein; Belongs to the complex I 20 kDa subunit family.	UCR_hinge domain-containing protein.	0.944
A0A0D3ETF0	A0A0D3FBP1	Oxidored_q6 domain-containing protein; Belongs to the complex I 20 kDa subunit family.	Uncharacterized protein; Belongs to the cyclin family.	0.990
A0A0D3ETF0	A0A0D3FFD2	Oxidored_q6 domain-containing protein; Belongs to the complex I 20 kDa subunit family.	Uncharacterized protein; Belongs to the peptidase M16 family.	0.961
A0A0D3ETF0	A0A0D3FQF5	Oxidored_q6 domain-containing protein; Belongs to the complex I 20 kDa subunit family.	Cytochrome b-c1 complex subunit 7; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is part of the mitochondrial respiratory chain; Belongs to the UQCRB/QCR7 family.	0.985
A0A0D3ETF0	A0A0D3G7D9	Oxidored_q6 domain-containing protein; Belongs to the complex I 20 kDa subunit family.	Uncharacterized protein.	0.981
A0A0D3ETF0	A0A0D3GT98	Oxidored_q6 domain-containing protein; Belongs to the complex I 20 kDa subunit family.	Uncharacterized protein.	0.999
A0A0D3EUN7	A0A0D3ETF0	Plus3 domain-containing protein.	Oxidored_q6 domain-containing protein; Belongs to the complex I 20 kDa subunit family.	0.995
A0A0D3EUN7	A0A0D3EYE2	Plus3 domain-containing protein.	Cytochrome c domain-containing protein.	0.992
A0A0D3EUN7	A0A0D3F5R1	Plus3 domain-containing protein.	Cytochrome b-c1 complex subunit Rieske, mitochondrial; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	0.981
A0A0D3EUN7	A0A0D3F648	Plus3 domain-containing protein.	UCR_hinge domain-containing protein.	0.990
A0A0D3EUN7	A0A0D3FBP1	Plus3 domain-containing protein.	Uncharacterized protein; Belongs to the cyclin family.	0.998
A0A0D3EUN7	A0A0D3FFD2	Plus3 domain-containing protein.	Uncharacterized protein; Belongs to the peptidase M16 family.	0.992
A0A0D3EUN7	A0A0D3FQF5	Plus3 domain-containing protein.	Cytochrome b-c1 complex subunit 7; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is part of the mitochondrial respiratory chain; Belongs to the UQCRB/QCR7 family.	0.998
A0A0D3EUN7	A0A0D3G7D9	Plus3 domain-containing protein.	Uncharacterized protein.	0.995
A0A0D3EUN7	A0A0D3GT98	Plus3 domain-containing protein.	Uncharacterized protein.	0.999
A0A0D3EYE2	A0A0D3ETF0	Cytochrome c domain-containing protein.	Oxidored_q6 domain-containing protein; Belongs to the complex I 20 kDa subunit family.	0.985
A0A0D3EYE2	A0A0D3EUN7	Cytochrome c domain-containing protein.	Plus3 domain-containing protein.	0.992