(13 nodes) NADH dehydrogenase complex, and Gamma carbonic anhydrase-like network (Oryza barthii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0D3ET15	Uncharacterized protein. (59 aa)
	A0A0D3ETN9	Uncharacterized protein. (155 aa)
	A0A0D3EUC1	Uncharacterized protein. (137 aa)
	A0A0D3F5I3	Uncharacterized protein. (188 aa)
	A0A0D3FMJ9	Uncharacterized protein. (119 aa)
	A0A0D3G918	Uncharacterized protein. (66 aa)
	A0A0D3GL06	Uncharacterized protein. (73 aa)
	A0A0D3GMV5	Uncharacterized protein. (64 aa)
	A0A0D3GR98	Uncharacterized protein. (144 aa)
	A0A0D3H366	Uncharacterized protein. (124 aa)
	A0A0D3H8W1	Uncharacterized protein. (158 aa)
	A0A0D3HA11	Uncharacterized protein. (83 aa)
	A0A0D3HGF4	Uncharacterized protein. (116 aa)

Your Current Organism:

Oryza barthii

NCBI taxonomy Id: 65489
Other names: African wild rice, O. barthii, Oryza barthii A.Chev., Oryza breviligulata, Oryza breviligulata A.Chev. & Roehr.

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0D3ET15	A0A0D3ETN9	Uncharacterized protein.	Uncharacterized protein.	0.799
A0A0D3ET15	A0A0D3EUC1	Uncharacterized protein.	Uncharacterized protein.	0.841
A0A0D3ET15	A0A0D3F5I3	Uncharacterized protein.	Uncharacterized protein.	0.828
A0A0D3ET15	A0A0D3FMJ9	Uncharacterized protein.	Uncharacterized protein.	0.891
A0A0D3ET15	A0A0D3G918	Uncharacterized protein.	Uncharacterized protein.	0.874
A0A0D3ET15	A0A0D3GL06	Uncharacterized protein.	Uncharacterized protein.	0.819
A0A0D3ET15	A0A0D3GMV5	Uncharacterized protein.	Uncharacterized protein.	0.839
A0A0D3ET15	A0A0D3GR98	Uncharacterized protein.	Uncharacterized protein.	0.874
A0A0D3ET15	A0A0D3H366	Uncharacterized protein.	Uncharacterized protein.	0.793
A0A0D3ET15	A0A0D3H8W1	Uncharacterized protein.	Uncharacterized protein.	0.846
A0A0D3ET15	A0A0D3HA11	Uncharacterized protein.	Uncharacterized protein.	0.869
A0A0D3ET15	A0A0D3HGF4	Uncharacterized protein.	Uncharacterized protein.	0.861
A0A0D3ETN9	A0A0D3ET15	Uncharacterized protein.	Uncharacterized protein.	0.799
A0A0D3ETN9	A0A0D3EUC1	Uncharacterized protein.	Uncharacterized protein.	0.841
A0A0D3ETN9	A0A0D3F5I3	Uncharacterized protein.	Uncharacterized protein.	0.905
A0A0D3ETN9	A0A0D3FMJ9	Uncharacterized protein.	Uncharacterized protein.	0.885
A0A0D3ETN9	A0A0D3G918	Uncharacterized protein.	Uncharacterized protein.	0.866
A0A0D3ETN9	A0A0D3GL06	Uncharacterized protein.	Uncharacterized protein.	0.807
A0A0D3ETN9	A0A0D3GMV5	Uncharacterized protein.	Uncharacterized protein.	0.839
A0A0D3ETN9	A0A0D3GR98	Uncharacterized protein.	Uncharacterized protein.	0.846