5 items (Oryza barthii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0D3EWT0	Ammonium transporter. (498 aa)
	A0A0D3F7Q5	Ammonium transporter. (766 aa)
	A0A0D3FP33	Uncharacterized protein. (290 aa)
	A0A0D3FXU1	Ammonium transporter. (547 aa)
	A0A0D3G2X0	Uncharacterized protein; Belongs to the P(II) protein family. (208 aa)

Your Current Organism:

Oryza barthii

NCBI taxonomy Id: 65489
Other names: African wild rice, O. barthii, Oryza barthii A.Chev., Oryza breviligulata, Oryza breviligulata A.Chev. & Roehr.

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0D3EWT0	A0A0D3G2X0	Ammonium transporter.	Uncharacterized protein; Belongs to the P(II) protein family.	0.980
A0A0D3F7Q5	A0A0D3G2X0	Ammonium transporter.	Uncharacterized protein; Belongs to the P(II) protein family.	0.984
A0A0D3FP33	A0A0D3FXU1	Uncharacterized protein.	Ammonium transporter.	0.627
A0A0D3FP33	A0A0D3G2X0	Uncharacterized protein.	Uncharacterized protein; Belongs to the P(II) protein family.	0.980
A0A0D3FXU1	A0A0D3FP33	Ammonium transporter.	Uncharacterized protein.	0.627
A0A0D3FXU1	A0A0D3G2X0	Ammonium transporter.	Uncharacterized protein; Belongs to the P(II) protein family.	0.984
A0A0D3G2X0	A0A0D3EWT0	Uncharacterized protein; Belongs to the P(II) protein family.	Ammonium transporter.	0.980
A0A0D3G2X0	A0A0D3F7Q5	Uncharacterized protein; Belongs to the P(II) protein family.	Ammonium transporter.	0.984
A0A0D3G2X0	A0A0D3FP33	Uncharacterized protein; Belongs to the P(II) protein family.	Uncharacterized protein.	0.980
A0A0D3G2X0	A0A0D3FXU1	Uncharacterized protein; Belongs to the P(II) protein family.	Ammonium transporter.	0.984