(10 nodes) Mixed, incl. Aurora kinase-like, and PP2CA INTERACTING RING FINGER PROTEIN 2-like network (Oryza barthii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0D3EKK0	Protein kinase domain-containing protein. (292 aa)
	A0A0D3F3B2	UBIQUITIN_CONJUGAT_2 domain-containing protein. (113 aa)
	A0A0D3FPG3	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (246 aa)
	A0A0D3G1N1	RING-type domain-containing protein. (4737 aa)
	A0A0D3G321	RING-type domain-containing protein. (868 aa)
	A0A0D3G5Q2	Uncharacterized protein. (954 aa)
	A0A0D3GL61	Uncharacterized protein. (1737 aa)
	A0A0D3H649	RING-type domain-containing protein. (657 aa)
	A0A0D3HGK5	Uncharacterized protein. (2037 aa)
	A0A0D3HGQ6	Uncharacterized protein. (190 aa)

Your Current Organism:

Oryza barthii

NCBI taxonomy Id: 65489
Other names: African wild rice, O. barthii, Oryza barthii A.Chev., Oryza breviligulata, Oryza breviligulata A.Chev. & Roehr.

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0D3EKK0	A0A0D3F3B2	Protein kinase domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.637
A0A0D3EKK0	A0A0D3G1N1	Protein kinase domain-containing protein.	RING-type domain-containing protein.	0.948
A0A0D3EKK0	A0A0D3G321	Protein kinase domain-containing protein.	RING-type domain-containing protein.	0.948
A0A0D3EKK0	A0A0D3G5Q2	Protein kinase domain-containing protein.	Uncharacterized protein.	0.764
A0A0D3EKK0	A0A0D3GL61	Protein kinase domain-containing protein.	Uncharacterized protein.	0.764
A0A0D3EKK0	A0A0D3H649	Protein kinase domain-containing protein.	RING-type domain-containing protein.	0.948
A0A0D3EKK0	A0A0D3HGK5	Protein kinase domain-containing protein.	Uncharacterized protein.	0.690
A0A0D3EKK0	A0A0D3HGQ6	Protein kinase domain-containing protein.	Uncharacterized protein.	0.948
A0A0D3F3B2	A0A0D3EKK0	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Protein kinase domain-containing protein.	0.637
A0A0D3F3B2	A0A0D3FPG3	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.637
A0A0D3F3B2	A0A0D3G1N1	UBIQUITIN_CONJUGAT_2 domain-containing protein.	RING-type domain-containing protein.	0.641
A0A0D3F3B2	A0A0D3G321	UBIQUITIN_CONJUGAT_2 domain-containing protein.	RING-type domain-containing protein.	0.641
A0A0D3F3B2	A0A0D3H649	UBIQUITIN_CONJUGAT_2 domain-containing protein.	RING-type domain-containing protein.	0.739
A0A0D3F3B2	A0A0D3HGQ6	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Uncharacterized protein.	0.641
A0A0D3FPG3	A0A0D3F3B2	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.637
A0A0D3FPG3	A0A0D3G1N1	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	RING-type domain-containing protein.	0.948
A0A0D3FPG3	A0A0D3G321	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	RING-type domain-containing protein.	0.948
A0A0D3FPG3	A0A0D3G5Q2	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.764
A0A0D3FPG3	A0A0D3GL61	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.764
A0A0D3FPG3	A0A0D3H649	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	RING-type domain-containing protein.	0.948