23 items (Oryza barthii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0D3HCC0	Uncharacterized protein. (278 aa)
	A0A0D3EUJ6	Uncharacterized protein. (449 aa)
	A0A0D3EV92	RNase III domain-containing protein. (556 aa)
	A0A0D3FD49	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily. (1900 aa)
	A0A0D3FF38	YrdC-like domain-containing protein. (304 aa)
	A0A0D3FH88	Macro domain-containing protein. (757 aa)
	A0A0D3FRI6	RNase III domain-containing protein. (176 aa)
	A0A0D3G1W2	A to I editase domain-containing protein. (395 aa)
	A0A0D3G3A9	Uncharacterized protein. (585 aa)
	A0A0D3GE67	Matrin-type domain-containing protein. (259 aa)
	A0A0D3GJC9	C2H2-type domain-containing protein. (366 aa)
	A0A0D3GY84	Uncharacterized protein. (443 aa)
	A0A0D3GY87	Uncharacterized protein. (156 aa)
	A0A0D3GZS3	Uncharacterized protein. (319 aa)
	A0A0D3H0R4	C2H2-type domain-containing protein. (471 aa)
	A0A0D3H2H8	YrdC-like domain-containing protein. (316 aa)
	A0A0D3H3G5	Uncharacterized protein. (175 aa)
	A0A0D3H6Y9	Matrin-type domain-containing protein. (485 aa)
	A0A0D3H8Q9	Uncharacterized protein. (357 aa)
	A0A0D3HC94	Uncharacterized protein. (421 aa)
	A0A0D3HHB2	DRBM domain-containing protein. (479 aa)
	A0A0D3HEX8	Uncharacterized protein. (164 aa)
	A0A0D3HET1	Uncharacterized protein. (514 aa)

Your Current Organism:

Oryza barthii

NCBI taxonomy Id: 65489
Other names: African wild rice, O. barthii, Oryza barthii A.Chev., Oryza breviligulata, Oryza breviligulata A.Chev. & Roehr.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0D3EUJ6	A0A0D3FD49	Uncharacterized protein.	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	0.568
A0A0D3EUJ6	A0A0D3FRI6	Uncharacterized protein.	RNase III domain-containing protein.	0.447
A0A0D3FD49	A0A0D3EUJ6	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	Uncharacterized protein.	0.568
A0A0D3FD49	A0A0D3G1W2	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	A to I editase domain-containing protein.	0.408
A0A0D3FD49	A0A0D3G3A9	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	Uncharacterized protein.	0.418
A0A0D3FD49	A0A0D3GZS3	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	Uncharacterized protein.	0.551
A0A0D3FD49	A0A0D3H8Q9	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	Uncharacterized protein.	0.418
A0A0D3FD49	A0A0D3HET1	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	Uncharacterized protein.	0.577
A0A0D3FD49	A0A0D3HHB2	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	DRBM domain-containing protein.	0.551
A0A0D3FF38	A0A0D3H2H8	YrdC-like domain-containing protein.	YrdC-like domain-containing protein.	0.507
A0A0D3FRI6	A0A0D3EUJ6	RNase III domain-containing protein.	Uncharacterized protein.	0.447
A0A0D3FRI6	A0A0D3HET1	RNase III domain-containing protein.	Uncharacterized protein.	0.450
A0A0D3G1W2	A0A0D3FD49	A to I editase domain-containing protein.	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	0.408
A0A0D3G3A9	A0A0D3FD49	Uncharacterized protein.	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	0.418
A0A0D3GZS3	A0A0D3FD49	Uncharacterized protein.	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	0.551
A0A0D3H2H8	A0A0D3FF38	YrdC-like domain-containing protein.	YrdC-like domain-containing protein.	0.507
A0A0D3H8Q9	A0A0D3FD49	Uncharacterized protein.	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	0.418
A0A0D3HET1	A0A0D3FD49	Uncharacterized protein.	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	0.577
A0A0D3HET1	A0A0D3FRI6	Uncharacterized protein.	RNase III domain-containing protein.	0.450
A0A0D3HHB2	A0A0D3FD49	DRBM domain-containing protein.	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	0.551