70 items (Oryza barthii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0D3FIS3	Uncharacterized protein. (186 aa)
	A0A0D3HVR1	Uncharacterized protein. (254 aa)
	EFTS-2	Elongation factor Ts, mitochondrial; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family. (1123 aa)
	A0A0D3HVD8	EF_TS domain-containing protein. (164 aa)
	A0A0D3HUW1	Eukaryotic translation initiation factor 5A. (160 aa)
	A0A0D3HRT5	TFIIS N-terminal domain-containing protein. (224 aa)
	A0A0D3HIM4	TFIIS N-terminal domain-containing protein. (210 aa)
	A0A0D3HHG8	Uncharacterized protein. (191 aa)
	A0A0D3H8S9	Uncharacterized protein. (197 aa)
	A0A0D3H5E3	Uncharacterized protein. (269 aa)
	A0A0D3H2P2	Uncharacterized protein. (173 aa)
	A0A0D3H1Q9	Uncharacterized protein. (383 aa)
	A0A0D3H1Q7	Uncharacterized protein. (145 aa)
	EFTS	Elongation factor Ts, mitochondrial; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family. (482 aa)
	A0A0D3GWR7	Uncharacterized protein. (261 aa)
	A0A0D3GUM1	EF1_GNE domain-containing protein; Belongs to the EF-1-beta/EF-1-delta family. (224 aa)
	A0A0D3GU53	TFIIS N-terminal domain-containing protein. (326 aa)
	A0A0D3GTH3	EF1_GNE domain-containing protein; Belongs to the EF-1-beta/EF-1-delta family. (251 aa)
	A0A0D3GT40	eIF-5a domain-containing protein. (119 aa)
	A0A0D3GNY5	eIF-5a domain-containing protein. (253 aa)
	A0A0D3GNU6	Uncharacterized protein. (381 aa)
	A0A0D3GLL3	Uncharacterized protein. (94 aa)
	A0A0D3GLI2	Eukaryotic translation initiation factor 5A. (162 aa)
	A0A0D3GKV1	Uncharacterized protein. (594 aa)
	A0A0D3EL58	Uncharacterized protein. (206 aa)
	A0A0D3EMH9	TFIIS N-terminal domain-containing protein. (195 aa)
	A0A0D3EPD9	EAF domain-containing protein. (319 aa)
	A0A0D3ETH6	Tr-type G domain-containing protein. (853 aa)
	A0A0D3ETV3	Tr-type G domain-containing protein. (841 aa)
	A0A0D3EU27	Tr-type G domain-containing protein. (656 aa)
	A0A0D3F298	TFIIS central domain-containing protein. (1122 aa)
	A0A0D3F2J8	Uncharacterized protein. (476 aa)
	A0A0D3F3Q5	Tr-type G domain-containing protein. (711 aa)
	A0A0D3F4U3	Tr-type G domain-containing protein. (469 aa)
	A0A0D3F5H1	Uncharacterized protein. (218 aa)
	A0A0D3F5Q7	Tr-type G domain-containing protein. (843 aa)
	A0A0D3F660	EFG_C domain-containing protein. (757 aa)
	A0A0D3F748	Elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. (467 aa)
	A0A0D3FEJ0	Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. (447 aa)
	A0A0D3FEJ1	Uncharacterized protein. (918 aa)
	A0A0D3FF76	Uncharacterized protein. (91 aa)
	A0A0D3FYE6	Elongation factor G, chloroplastic; Chloroplast-localized elongation factor EF-G involved in protein synthesis in plastids. Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl- tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome. (702 aa)
	A0A0D3FIT3	Uncharacterized protein. (234 aa)
	A0A0D3FJN1	EF1_GNE domain-containing protein; Belongs to the EF-1-beta/EF-1-delta family. (224 aa)
	A0A0D3FKH0	Elongation factor G, mitochondrial; Mitochondrial GTPase that catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome. (770 aa)
	A0A0D3FLV7	Tr-type G domain-containing protein. (1029 aa)
	A0A0D3GIX9	TFIIS N-terminal domain-containing protein. (900 aa)
	A0A0D3FMW7	Uncharacterized protein. (263 aa)
	A0A0D3FPB7	Eukaryotic translation initiation factor 5A. (174 aa)
	A0A0D3FQE9	Uncharacterized protein. (262 aa)
	A0A0D3GIB8	TFIIS central domain-containing protein. (1023 aa)
	A0A0D3GI13	Uncharacterized protein. (419 aa)
	A0A0D3GFX1	Uncharacterized protein. (585 aa)
	A0A0D3GD38	Uncharacterized protein. (274 aa)
	A0A0D3G8S3	Uncharacterized protein. (122 aa)
	A0A0D3G8S2	DUF1618 domain-containing protein. (434 aa)
	A0A0D3G7M3	TFIIS N-terminal domain-containing protein. (532 aa)
	A0A0D3G7J6	UBA domain-containing protein. (636 aa)
	A0A0D3G6Q7	Uncharacterized protein. (463 aa)
	A0A0D3G532	Uncharacterized protein. (1506 aa)
	A0A0D3G524	DUF1618 domain-containing protein. (217 aa)
	A0A0D3G522	DUF1618 domain-containing protein. (536 aa)
	A0A0D3FQL6	Uncharacterized protein. (367 aa)
	A0A0D3FRE9	Elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. (453 aa)
	A0A0D3G1R1	Uncharacterized protein. (729 aa)
	A0A0D3FZN0	Tr-type G domain-containing protein. (650 aa)
	A0A0D3FS13	Tr-type G domain-containing protein. (843 aa)
	A0A0D3FTK2	Tr-type G domain-containing protein. (548 aa)
	A0A0D3FV19	Uncharacterized protein. (310 aa)
	A0A0D3FV20	Uncharacterized protein. (201 aa)

Your Current Organism:

Oryza barthii

NCBI taxonomy Id: 65489
Other names: African wild rice, O. barthii, Oryza barthii A.Chev., Oryza breviligulata, Oryza breviligulata A.Chev. & Roehr.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A0D3EL58	A0A0D3ETH6	A0A0D3EL58	A0A0D3ETH6	Uncharacterized protein.	Tr-type G domain-containing protein.	0.958
A0A0D3EL58	A0A0D3ETV3	A0A0D3EL58	A0A0D3ETV3	Uncharacterized protein.	Tr-type G domain-containing protein.	0.958
A0A0D3EL58	A0A0D3EU27	A0A0D3EL58	A0A0D3EU27	Uncharacterized protein.	Tr-type G domain-containing protein.	0.876
A0A0D3EL58	A0A0D3F3Q5	A0A0D3EL58	A0A0D3F3Q5	Uncharacterized protein.	Tr-type G domain-containing protein.	0.876
A0A0D3EL58	A0A0D3F5Q7	A0A0D3EL58	A0A0D3F5Q7	Uncharacterized protein.	Tr-type G domain-containing protein.	0.958
A0A0D3EL58	A0A0D3F660	A0A0D3EL58	A0A0D3F660	Uncharacterized protein.	EFG_C domain-containing protein.	0.958
A0A0D3EL58	A0A0D3F748	A0A0D3EL58	A0A0D3F748	Uncharacterized protein.	Elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.	0.997
A0A0D3EL58	A0A0D3FKH0	A0A0D3EL58	A0A0D3FKH0	Uncharacterized protein.	Elongation factor G, mitochondrial; Mitochondrial GTPase that catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome.	0.958
A0A0D3EL58	A0A0D3FLV7	A0A0D3EL58	A0A0D3FLV7	Uncharacterized protein.	Tr-type G domain-containing protein.	0.958
A0A0D3EL58	A0A0D3FPB7	A0A0D3EL58	A0A0D3FPB7	Uncharacterized protein.	Eukaryotic translation initiation factor 5A.	0.901
A0A0D3EL58	A0A0D3FQE9	A0A0D3EL58	A0A0D3FQE9	Uncharacterized protein.	Uncharacterized protein.	0.901
A0A0D3EL58	A0A0D3FRE9	A0A0D3EL58	A0A0D3FRE9	Uncharacterized protein.	Elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.	0.997
A0A0D3EL58	A0A0D3FS13	A0A0D3EL58	A0A0D3FS13	Uncharacterized protein.	Tr-type G domain-containing protein.	0.958
A0A0D3EL58	A0A0D3FYE6	A0A0D3EL58	A0A0D3FYE6	Uncharacterized protein.	Elongation factor G, chloroplastic; Chloroplast-localized elongation factor EF-G involved in protein synthesis in plastids. Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl- tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome.	0.958
A0A0D3EL58	A0A0D3G522	A0A0D3EL58	A0A0D3G522	Uncharacterized protein.	DUF1618 domain-containing protein.	0.958
A0A0D3EL58	A0A0D3G524	A0A0D3EL58	A0A0D3G524	Uncharacterized protein.	DUF1618 domain-containing protein.	0.958
A0A0D3EL58	A0A0D3G532	A0A0D3EL58	A0A0D3G532	Uncharacterized protein.	Uncharacterized protein.	0.958
A0A0D3EL58	A0A0D3G8S2	A0A0D3EL58	A0A0D3G8S2	Uncharacterized protein.	DUF1618 domain-containing protein.	0.958
A0A0D3EL58	A0A0D3G8S3	A0A0D3EL58	A0A0D3G8S3	Uncharacterized protein.	Uncharacterized protein.	0.958
A0A0D3EL58	A0A0D3GLI2	A0A0D3EL58	A0A0D3GLI2	Uncharacterized protein.	Eukaryotic translation initiation factor 5A.	0.901