16 items (Oryza barthii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0D3EQ16	RNase III domain-containing protein. (256 aa)
	A0A0D3EV92	RNase III domain-containing protein. (556 aa)
	A0A0D3EXN5	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily. (1609 aa)
	A0A0D3FD49	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily. (1900 aa)
	A0A0D3FKT1	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily. (1336 aa)
	A0A0D3FRI6	RNase III domain-containing protein. (176 aa)
	A0A0D3FXT8	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily. (1483 aa)
	A0A0D3G5C3	Uncharacterized protein. (404 aa)
	A0A0D3G600	RNase III domain-containing protein. (220 aa)
	A0A0D3GGG4	Uncharacterized protein. (299 aa)
	A0A0D3GWB9	Uncharacterized protein. (130 aa)
	A0A0D3GZS3	Uncharacterized protein. (319 aa)
	A0A0D3H6V9	Uncharacterized protein. (327 aa)
	A0A0D3HEW9	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily. (1563 aa)
	A0A0D3HHB2	DRBM domain-containing protein. (479 aa)
	A0A0D3HJY5	RNase III domain-containing protein. (259 aa)

Your Current Organism:

Oryza barthii

NCBI taxonomy Id: 65489
Other names: African wild rice, O. barthii, Oryza barthii A.Chev., Oryza breviligulata, Oryza breviligulata A.Chev. & Roehr.

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0D3EV92	A0A0D3GGG4	RNase III domain-containing protein.	Uncharacterized protein.	0.410
A0A0D3FD49	A0A0D3GZS3	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	Uncharacterized protein.	0.551
A0A0D3FD49	A0A0D3HHB2	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	DRBM domain-containing protein.	0.551
A0A0D3FRI6	A0A0D3H6V9	RNase III domain-containing protein.	Uncharacterized protein.	0.421
A0A0D3GGG4	A0A0D3EV92	Uncharacterized protein.	RNase III domain-containing protein.	0.410
A0A0D3GZS3	A0A0D3FD49	Uncharacterized protein.	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	0.551
A0A0D3H6V9	A0A0D3FRI6	Uncharacterized protein.	RNase III domain-containing protein.	0.421
A0A0D3HHB2	A0A0D3FD49	DRBM domain-containing protein.	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	0.551