62 items (Oryza barthii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0D3HWS4	G-patch domain-containing protein. (752 aa)
	A0A0D3EPS3	Uncharacterized protein. (955 aa)
	A0A0D3EQP0	Uncharacterized protein. (188 aa)
	A0A0D3EQP1	Uncharacterized protein. (330 aa)
	A0A0D3EQX0	G-patch domain-containing protein. (442 aa)
	A0A0D3ESM2	DUF1618 domain-containing protein. (1136 aa)
	A0A0D3EYY5	Uncharacterized protein. (173 aa)
	A0A0D3EZH7	Small nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. (132 aa)
	A0A0D3F0M8	TOG domain-containing protein. (1158 aa)
	A0A0D3F305	Ubiquitin-like domain-containing protein. (567 aa)
	A0A0D3F3D2	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. (228 aa)
	A0A0D3F3M7	MFAP1 domain-containing protein. (436 aa)
	A0A0D3F3X3	MFAP1 domain-containing protein. (346 aa)
	A0A0D3F412	Uncharacterized protein. (326 aa)
	A0A0D3F4F8	Uncharacterized protein. (310 aa)
	A0A0D3F7D0	Uncharacterized protein. (488 aa)
	A0A0D3FCC2	Uncharacterized protein. (1066 aa)
	A0A0D3FDK3	Uncharacterized protein. (972 aa)
	A0A0D3FFA9	Uncharacterized protein. (785 aa)
	A0A0D3FFF8	Uncharacterized protein. (1163 aa)
	A0A0D3FG13	Small nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. (132 aa)
	A0A0D3FGJ2	Matrin-type domain-containing protein. (352 aa)
	A0A0D3FJQ5	Small nuclear ribonucleoprotein G. (80 aa)
	A0A0D3FMV8	Prp18 domain-containing protein. (373 aa)
	A0A0D3FNY1	DUF3700 domain-containing protein. (251 aa)
	A0A0D3FP78	DUF1618 domain-containing protein. (474 aa)
	A0A0D3FP79	DUF1618 domain-containing protein. (518 aa)
	A0A0D3FP86	DUF1618 domain-containing protein. (331 aa)
	A0A0D3FQJ1	RRM domain-containing protein. (130 aa)
	A0A0D3FR90	Uncharacterized protein. (423 aa)
	A0A0D3FRZ4	G-patch domain-containing protein. (296 aa)
	A0A0D3FW52	Uncharacterized protein. (1411 aa)
	A0A0D3FXG9	RRM domain-containing protein. (476 aa)
	A0A0D3FXM8	G-patch domain-containing protein. (396 aa)
	A0A0D3FXW2	G-patch domain-containing protein. (339 aa)
	A0A0D3FXW3	Uncharacterized protein. (292 aa)
	A0A0D3G5I7	Uncharacterized protein. (723 aa)
	A0A0D3GDB3	Uncharacterized protein. (489 aa)
	A0A0D3GEM3	Uncharacterized protein. (672 aa)
	A0A0D3GG49	MFAP1 domain-containing protein. (137 aa)
	A0A0D3GHA5	Uncharacterized protein. (439 aa)
	A0A0D3GIJ2	Tr-type G domain-containing protein. (898 aa)
	A0A0D3GIS1	Uncharacterized protein. (74 aa)
	A0A0D3GIS2	SF3b1 domain-containing protein. (1119 aa)
	A0A0D3GL52	Uncharacterized protein. (182 aa)
	A0A0D3GMP7	Uncharacterized protein. (143 aa)
	A0A0D3GPL0	Uncharacterized protein. (486 aa)
	A0A0D3GQK1	Uncharacterized protein. (361 aa)
	A0A0D3GSM3	SFM domain-containing protein. (438 aa)
	A0A0D3GTD9	Small nuclear ribonucleoprotein G. (81 aa)
	A0A0D3GU70	Uncharacterized protein. (927 aa)
	A0A0D3GWY2	Uncharacterized protein. (569 aa)
	A0A0D3GYI4	Uncharacterized protein. (469 aa)
	A0A0D3GZQ3	Uncharacterized protein. (949 aa)
	A0A0D3H1T7	Cir_N domain-containing protein. (513 aa)
	A0A0D3HAK9	RRM domain-containing protein. (430 aa)
	A0A0D3HCB3	Uncharacterized protein. (442 aa)
	A0A0D3HEH8	Uncharacterized protein. (526 aa)
	A0A0D3HJN4	Uncharacterized protein. (164 aa)
	A0A0D3HP90	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (580 aa)
	A0A0D3HPZ1	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (539 aa)
	A0A0D3HR95	Uncharacterized protein. (89 aa)

Your Current Organism:

Oryza barthii

NCBI taxonomy Id: 65489
Other names: African wild rice, O. barthii, Oryza barthii A.Chev., Oryza breviligulata, Oryza breviligulata A.Chev. & Roehr.

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0D3EPS3	A0A0D3EYY5	Uncharacterized protein.	Uncharacterized protein.	0.742
A0A0D3EPS3	A0A0D3EZH7	Uncharacterized protein.	Small nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome.	0.795
A0A0D3EPS3	A0A0D3F0M8	Uncharacterized protein.	TOG domain-containing protein.	0.663
A0A0D3EPS3	A0A0D3F305	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.729
A0A0D3EPS3	A0A0D3F3D2	Uncharacterized protein.	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.	0.955
A0A0D3EPS3	A0A0D3F7D0	Uncharacterized protein.	Uncharacterized protein.	0.890
A0A0D3EPS3	A0A0D3FCC2	Uncharacterized protein.	Uncharacterized protein.	0.951
A0A0D3EPS3	A0A0D3FDK3	Uncharacterized protein.	Uncharacterized protein.	0.742
A0A0D3EPS3	A0A0D3FFA9	Uncharacterized protein.	Uncharacterized protein.	0.882
A0A0D3EPS3	A0A0D3FFF8	Uncharacterized protein.	Uncharacterized protein.	0.729
A0A0D3EPS3	A0A0D3FG13	Uncharacterized protein.	Small nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome.	0.795
A0A0D3EPS3	A0A0D3FGJ2	Uncharacterized protein.	Matrin-type domain-containing protein.	0.909
A0A0D3EPS3	A0A0D3FJQ5	Uncharacterized protein.	Small nuclear ribonucleoprotein G.	0.840
A0A0D3EPS3	A0A0D3FNY1	Uncharacterized protein.	DUF3700 domain-containing protein.	0.836
A0A0D3EPS3	A0A0D3FR90	Uncharacterized protein.	Uncharacterized protein.	0.890
A0A0D3EPS3	A0A0D3FW52	Uncharacterized protein.	Uncharacterized protein.	0.402
A0A0D3EPS3	A0A0D3FXG9	Uncharacterized protein.	RRM domain-containing protein.	0.494
A0A0D3EPS3	A0A0D3G5I7	Uncharacterized protein.	Uncharacterized protein.	0.402
A0A0D3EPS3	A0A0D3GHA5	Uncharacterized protein.	Uncharacterized protein.	0.402
A0A0D3EPS3	A0A0D3GIS1	Uncharacterized protein.	Uncharacterized protein.	0.663