66 items (Oryza barthii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0D3FVG9	SAM domain-containing protein. (193 aa)
	A0A0D3F0F1	Uncharacterized protein. (622 aa)
	A0A0D3F0G7	Uncharacterized protein. (125 aa)
	A0A0D3F0L2	Uncharacterized protein. (170 aa)
	A0A0D3F0L3	Uncharacterized protein. (232 aa)
	A0A0D3F0L5	Uncharacterized protein. (353 aa)
	A0A0D3F0L8	Uncharacterized protein. (359 aa)
	A0A0D3F0N7	Uncharacterized protein. (301 aa)
	A0A0D3F1I1	Uncharacterized protein. (92 aa)
	A0A0D3F4M1	Uncharacterized protein. (372 aa)
	A0A0D3F5D8	Uncharacterized protein. (93 aa)
	A0A0D3F5U8	Uncharacterized protein. (251 aa)
	A0A0D3F8R9	Uncharacterized protein. (199 aa)
	A0A0D3FCY9	Uncharacterized protein. (194 aa)
	A0A0D3FEY0	Uncharacterized protein. (203 aa)
	A0A0D3FFD4	Plug_translocon domain-containing protein; Belongs to the SecY/SEC61-alpha family. (593 aa)
	A0A0D3FG10	AIG1-type G domain-containing protein. (433 aa)
	A0A0D3FGS0	Bac_surface_Ag domain-containing protein. (1273 aa)
	A0A0D3FHB5	Uncharacterized protein. (167 aa)
	A0A0D3FHE6	Uncharacterized protein. (87 aa)
	A0A0D3FHX5	Uncharacterized protein. (337 aa)
	A0A0D3FJT9	Uncharacterized protein. (152 aa)
	A0A0D3FLJ0	Uncharacterized protein. (93 aa)
	A0A0D3FU18	Uncharacterized protein. (98 aa)
	A0A0D3FU20	J domain-containing protein. (711 aa)
	A0A0D3FUW2	Uncharacterized protein. (165 aa)
	A0A0D3FZ15	Uncharacterized protein. (187 aa)
	A0A0D3G5X8	ULP_PROTEASE domain-containing protein. (452 aa)
	A0A0D3G742	Uncharacterized protein. (106 aa)
	A0A0D3G7C1	Uncharacterized protein; Belongs to the SecY/SEC61-alpha family. (546 aa)
	A0A0D3GBR6	Uncharacterized protein. (187 aa)
	A0A0D3GJE5	Uncharacterized protein. (114 aa)
	A0A0D3GPF0	Uncharacterized protein. (64 aa)
	A0A0D3GPZ6	Tim44 domain-containing protein. (475 aa)
	A0A0D3GTA1	Uncharacterized protein. (174 aa)
	A0A0D3GTA2	Uncharacterized protein. (150 aa)
	A0A0D3GY14	Uncharacterized protein. (558 aa)
	A0A0D3GZZ5	Uncharacterized protein. (175 aa)
	A0A0D3H4J8	Uncharacterized protein. (148 aa)
	A0A0D3H5P2	Uncharacterized protein; Belongs to the SecY/SEC61-alpha family. (1015 aa)
	A0A0D3H5Q0	Plug_translocon domain-containing protein; Belongs to the SecY/SEC61-alpha family. (553 aa)
	A0A0D3H8T2	Uncharacterized protein; Belongs to the SecY/SEC61-alpha family. (453 aa)
	A0A0D3H8T7	Uncharacterized protein; Belongs to the SecY/SEC61-alpha family. (213 aa)
	A0A0D3HCU0	Uncharacterized protein. (177 aa)
	A0A0D3HCZ7	Uncharacterized protein. (252 aa)
	A0A0D3HFP3	Uncharacterized protein. (195 aa)
	A0A0D3HHG9	Uncharacterized protein. (1335 aa)
	A0A0D3HJ66	SECA_MOTOR_DEAD domain-containing protein. (1065 aa)
	A0A0D3HJY4	Uncharacterized protein. (76 aa)
	A0A0D3HNC7	Uncharacterized protein. (247 aa)
	A0A0D3HQN4	Uncharacterized protein. (374 aa)
	A0A0D3HV12	Uncharacterized protein. (235 aa)
	A0A0D3HWN3	Uncharacterized protein; Belongs to the SecY/SEC61-alpha family. (436 aa)
	A0A0D3HWY8	Plug_translocon domain-containing protein; Belongs to the SecY/SEC61-alpha family. (384 aa)
	A0A0D3HWZ6	Plug_translocon domain-containing protein; Belongs to the SecY/SEC61-alpha family. (518 aa)
	A0A0D3EMB8	Uncharacterized protein. (345 aa)
	A0A0D3EN60	Protein translocase subunit SecA; Belongs to the SecA family. (992 aa)
	A0A0D3EP95	Uncharacterized protein. (359 aa)
	A0A0D3EXZ7	Uncharacterized protein. (226 aa)
	A0A0D3EZ80	Uncharacterized protein. (63 aa)
	A0A0D3EZ81	Uncharacterized protein. (121 aa)
	A0A0D3EZL7	Uncharacterized protein. (153 aa)
	A0A0D3EZM0	Uncharacterized protein. (151 aa)
	A0A0D3F093	Uncharacterized protein. (85 aa)
	A0A0D3F0A9	Uncharacterized protein. (315 aa)
	A0A0D3F0E7	Uncharacterized protein. (351 aa)

Your Current Organism:

Oryza barthii

NCBI taxonomy Id: 65489
Other names: African wild rice, O. barthii, Oryza barthii A.Chev., Oryza breviligulata, Oryza breviligulata A.Chev. & Roehr.

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... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0D3EMB8	A0A0D3EXZ7	Uncharacterized protein.	Uncharacterized protein.	0.511
A0A0D3EMB8	A0A0D3F093	Uncharacterized protein.	Uncharacterized protein.	0.956
A0A0D3EMB8	A0A0D3F5D8	Uncharacterized protein.	Uncharacterized protein.	0.956
A0A0D3EMB8	A0A0D3F8R9	Uncharacterized protein.	Uncharacterized protein.	0.727
A0A0D3EMB8	A0A0D3FCY9	Uncharacterized protein.	Uncharacterized protein.	0.727
A0A0D3EMB8	A0A0D3FEY0	Uncharacterized protein.	Uncharacterized protein.	0.623
A0A0D3EMB8	A0A0D3FHB5	Uncharacterized protein.	Uncharacterized protein.	0.494
A0A0D3EMB8	A0A0D3FHE6	Uncharacterized protein.	Uncharacterized protein.	0.636
A0A0D3EMB8	A0A0D3FJT9	Uncharacterized protein.	Uncharacterized protein.	0.636
A0A0D3EMB8	A0A0D3FZ15	Uncharacterized protein.	Uncharacterized protein.	0.727
A0A0D3EMB8	A0A0D3GPF0	Uncharacterized protein.	Uncharacterized protein.	0.727
A0A0D3EMB8	A0A0D3GPZ6	Uncharacterized protein.	Tim44 domain-containing protein.	0.692
A0A0D3EMB8	A0A0D3GTA1	Uncharacterized protein.	Uncharacterized protein.	0.636
A0A0D3EMB8	A0A0D3GTA2	Uncharacterized protein.	Uncharacterized protein.	0.636
A0A0D3EMB8	A0A0D3H4J8	Uncharacterized protein.	Uncharacterized protein.	0.494
A0A0D3EMB8	A0A0D3HCU0	Uncharacterized protein.	Uncharacterized protein.	0.623
A0A0D3EMB8	A0A0D3HFP3	Uncharacterized protein.	Uncharacterized protein.	0.727
A0A0D3EMB8	A0A0D3HJY4	Uncharacterized protein.	Uncharacterized protein.	0.956
A0A0D3EMB8	A0A0D3HV12	Uncharacterized protein.	Uncharacterized protein.	0.623
A0A0D3EN60	A0A0D3G7C1	Protein translocase subunit SecA; Belongs to the SecA family.	Uncharacterized protein; Belongs to the SecY/SEC61-alpha family.	0.450