20 items (Oryza barthii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0D3F9Q4	Uncharacterized protein. (150 aa)
	A0A0D3F7G2	Uncharacterized protein. (369 aa)
	A0A0D3F4A5	RRM_8 domain-containing protein. (782 aa)
	A0A0D3EZA0	Uncharacterized protein. (146 aa)
	A0A0D3ETB4	Uncharacterized protein. (309 aa)
	A0A0D3EQN7	Uncharacterized protein. (275 aa)
	A0A0D3EMJ6	Uncharacterized protein. (263 aa)
	A0A0D3EMB8	Uncharacterized protein. (345 aa)
	A0A0D3FEF3	Peptidase S59 domain-containing protein. (1005 aa)
	A0A0D3FF43	Uncharacterized protein. (277 aa)
	A0A0D3FHJ2	Uncharacterized protein. (188 aa)
	A0A0D3FHX5	Uncharacterized protein. (337 aa)
	A0A0D3FRJ5	Uncharacterized protein. (234 aa)
	A0A0D3FRV4	RRM_8 domain-containing protein. (839 aa)
	A0A0D3G2G4	Uncharacterized protein. (146 aa)
	A0A0D3G7S3	Uncharacterized protein. (68 aa)
	A0A0D3GA77	Uncharacterized protein. (275 aa)
	A0A0D3H5Y5	Uncharacterized protein. (274 aa)
	A0A0D3HSM4	Uncharacterized protein. (343 aa)
	A0A0D3FCG9	Uncharacterized protein. (205 aa)

Your Current Organism:

Oryza barthii

NCBI taxonomy Id: 65489
Other names: African wild rice, O. barthii, Oryza barthii A.Chev., Oryza breviligulata, Oryza breviligulata A.Chev. & Roehr.

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0D3EMB8	A0A0D3EQN7	Uncharacterized protein.	Uncharacterized protein.	0.781
A0A0D3EMB8	A0A0D3ETB4	Uncharacterized protein.	Uncharacterized protein.	0.781
A0A0D3EMB8	A0A0D3F4A5	Uncharacterized protein.	RRM_8 domain-containing protein.	0.801
A0A0D3EMB8	A0A0D3F9Q4	Uncharacterized protein.	Uncharacterized protein.	0.494
A0A0D3EMB8	A0A0D3FF43	Uncharacterized protein.	Uncharacterized protein.	0.801
A0A0D3EMB8	A0A0D3FRV4	Uncharacterized protein.	RRM_8 domain-containing protein.	0.801
A0A0D3EMB8	A0A0D3G7S3	Uncharacterized protein.	Uncharacterized protein.	0.781
A0A0D3EMB8	A0A0D3GA77	Uncharacterized protein.	Uncharacterized protein.	0.781
A0A0D3EMB8	A0A0D3H5Y5	Uncharacterized protein.	Uncharacterized protein.	0.781
A0A0D3EMJ6	A0A0D3HSM4	Uncharacterized protein.	Uncharacterized protein.	0.471
A0A0D3EQN7	A0A0D3EMB8	Uncharacterized protein.	Uncharacterized protein.	0.781
A0A0D3EQN7	A0A0D3FHX5	Uncharacterized protein.	Uncharacterized protein.	0.781
A0A0D3ETB4	A0A0D3EMB8	Uncharacterized protein.	Uncharacterized protein.	0.781
A0A0D3ETB4	A0A0D3FHX5	Uncharacterized protein.	Uncharacterized protein.	0.781
A0A0D3F4A5	A0A0D3EMB8	RRM_8 domain-containing protein.	Uncharacterized protein.	0.801
A0A0D3F4A5	A0A0D3FHX5	RRM_8 domain-containing protein.	Uncharacterized protein.	0.801
A0A0D3F9Q4	A0A0D3EMB8	Uncharacterized protein.	Uncharacterized protein.	0.494
A0A0D3F9Q4	A0A0D3FHX5	Uncharacterized protein.	Uncharacterized protein.	0.494
A0A0D3FF43	A0A0D3EMB8	Uncharacterized protein.	Uncharacterized protein.	0.801
A0A0D3FF43	A0A0D3FHX5	Uncharacterized protein.	Uncharacterized protein.	0.801