(109 nodes) Nuclear body network (Oryza barthii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0D3ER91	Uncharacterized protein. (441 aa)
	A0A0D3EM16	Uncharacterized protein. (773 aa)
	A0A0D3EJS5	Uncharacterized protein. (324 aa)
	A0A0D3HIV2	Uncharacterized protein. (986 aa)
	A0A0D3HI62	Uncharacterized protein. (567 aa)
	A0A0D3HF91	Uncharacterized protein. (929 aa)
	A0A0D3HF40	C2H2-type domain-containing protein. (349 aa)
	A0A0D3HV97	Fibronectin type-III domain-containing protein. (707 aa)
	A0A0D3HTQ1	RanBP2-type domain-containing protein. (431 aa)
	A0A0D3HRC3	Uncharacterized protein. (556 aa)
	A0A0D3HQX3	C3H1-type domain-containing protein. (390 aa)
	A0A0D3HEY3	FHA domain-containing protein. (560 aa)
	A0A0D3EXL9	RRM domain-containing protein. (677 aa)
	A0A0D3EXV7	Uncharacterized protein. (1771 aa)
	A0A0D3EYY5	Uncharacterized protein. (173 aa)
	A0A0D3EZ21	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1520 aa)
	A0A0D3F0Q3	C2H2-type domain-containing protein. (666 aa)
	A0A0D3F0T9	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1950 aa)
	A0A0D3F2P5	Uncharacterized protein. (233 aa)
	A0A0D3F2V7	Uncharacterized protein. (284 aa)
	A0A0D3F4C4	Uncharacterized protein. (810 aa)
	A0A0D3F5J3	Uncharacterized protein. (324 aa)
	A0A0D3F5P0	Uncharacterized protein. (1009 aa)
	A0A0D3F604	Uncharacterized protein. (202 aa)
	A0A0D3F6F3	Uncharacterized protein. (587 aa)
	A0A0D3F6Q5	Photolyase/cryptochrome alpha/beta domain-containing protein. (719 aa)
	A0A0D3F7H3	Uncharacterized protein. (300 aa)
	A0A0D3F7P4	Uncharacterized protein. (64 aa)
	A0A0D3F7T3	Photolyase/cryptochrome alpha/beta domain-containing protein. (651 aa)
	A0A0D3F820	Uncharacterized protein. (969 aa)
	A0A0D3F842	Uncharacterized protein. (319 aa)
	A0A0D3F8S0	Uncharacterized protein; Belongs to the MT-A70-like family. (706 aa)
	A0A0D3F8Z8	Uncharacterized protein. (155 aa)
	A0A0D3F9S3	Uncharacterized protein. (858 aa)
	A0A0D3FAQ5	RRM domain-containing protein. (216 aa)
	A0A0D3FB04	Uncharacterized protein. (1325 aa)
	A0A0D3FBF2	Uncharacterized protein. (185 aa)
	A0A0D3FD49	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily. (1900 aa)
	A0A0D3FDK3	Uncharacterized protein. (972 aa)
	A0A0D3FDU0	Uncharacterized protein; Belongs to the MT-A70-like family. (799 aa)
	A0A0D3FGL4	RRM domain-containing protein. (440 aa)
	A0A0D3FGY1	RING-type domain-containing protein. (305 aa)
	A0A0D3FH35	Uncharacterized protein. (410 aa)
	A0A0D3FHE1	Uncharacterized protein. (231 aa)
	A0A0D3FIC6	Uncharacterized protein. (324 aa)
	A0A0D3FIS2	RRM domain-containing protein. (243 aa)
	A0A0D3FIU4	Uncharacterized protein. (88 aa)
	A0A0D3FIV9	HIT-type domain-containing protein. (156 aa)
	A0A0D3FJ16	Uncharacterized protein. (277 aa)
	A0A0D3FJ19	RRM domain-containing protein. (145 aa)
	A0A0D3FJA2	RRM domain-containing protein. (198 aa)
	A0A0D3FKD8	Uncharacterized protein. (2126 aa)
	A0A0D3FMI8	Uncharacterized protein. (175 aa)
	A0A0D3FNY1	DUF3700 domain-containing protein. (251 aa)
	A0A0D3FS23	Uncharacterized protein. (295 aa)
	A0A0D3FV66	DUF1767 domain-containing protein. (650 aa)
	A0A0D3FWH7	Photolyase/cryptochrome alpha/beta domain-containing protein. (700 aa)
	A0A0D3FY81	Uncharacterized protein. (946 aa)
	A0A0D3FYB0	Uncharacterized protein. (164 aa)
	A0A0D3FZE1	Uncharacterized protein. (181 aa)
	A0A0D3FZF6	Uncharacterized protein. (412 aa)
	A0A0D3G078	Uncharacterized protein. (903 aa)
	A0A0D3G279	Uncharacterized protein. (954 aa)
	A0A0D3G2M3	Uncharacterized protein. (398 aa)
	A0A0D3G2P3	HECT domain-containing protein. (1321 aa)
	A0A0D3G357	Fibronectin type-III domain-containing protein. (607 aa)
	A0A0D3G3K7	Uncharacterized protein. (338 aa)
	A0A0D3G4C3	TPR_REGION domain-containing protein. (483 aa)
	A0A0D3G6P1	Uncharacterized protein. (193 aa)
	A0A0D3G8P7	HECT domain-containing protein. (1317 aa)
	A0A0D3GB88	Anaphase-promoting complex subunit 10; Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle. (201 aa)
	A0A0D3GC91	RRM domain-containing protein. (227 aa)
	A0A0D3GCU2	RRM domain-containing protein. (232 aa)
	A0A0D3GD03	Uncharacterized protein. (136 aa)
	A0A0D3GDN1	Uncharacterized protein. (301 aa)
	A0A0D3GE67	Matrin-type domain-containing protein. (259 aa)
	A0A0D3GEB4	RRM domain-containing protein. (204 aa)
	A0A0D3GG99	Uncharacterized protein. (580 aa)
	A0A0D3GGN1	Uncharacterized protein. (301 aa)
	A0A0D3GIJ2	Tr-type G domain-containing protein. (898 aa)
	A0A0D3GKE4	C2H2-type domain-containing protein. (597 aa)
	A0A0D3GPT0	Uncharacterized protein. (232 aa)
	A0A0D3GQL8	Uncharacterized protein. (282 aa)
	A0A0D3GRF8	Uncharacterized protein. (318 aa)
	A0A0D3GRH3	Uncharacterized protein. (120 aa)
	A0A0D3GSX1	Uncharacterized protein. (263 aa)
	A0A0D3GTR3	RRM domain-containing protein. (296 aa)
	A0A0D3GTX7	RRM domain-containing protein. (187 aa)
	A0A0D3GUV5	RRM domain-containing protein. (343 aa)
	A0A0D3GWH0	Brix domain-containing protein. (293 aa)
	A0A0D3GYZ4	FHA domain-containing protein. (421 aa)
	A0A0D3H1D0	Uncharacterized protein. (438 aa)
	A0A0D3H1J6	RRM domain-containing protein. (311 aa)
	A0A0D3H2V3	RRM domain-containing protein. (189 aa)
	A0A0D3H8V0	RRM domain-containing protein. (430 aa)
	A0A0D3H969	RRM domain-containing protein. (251 aa)
	A0A0D3H973	RRM domain-containing protein. (141 aa)
	A0A0D3HAK9	RRM domain-containing protein. (430 aa)
	A0A0D3HDE3	Uncharacterized protein. (295 aa)
	A0A0D3HE79	Uncharacterized protein; Belongs to the MT-A70-like family. (1013 aa)
	A0A0D3HP90	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (580 aa)
	A0A0D3HPD3	Uncharacterized protein. (194 aa)
	A0A0D3HPZ1	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (539 aa)
	A0A0D3HQ88	RRM domain-containing protein. (506 aa)
	A0A0D3EM52	Uncharacterized protein; Belongs to the MT-A70-like family. (764 aa)
	A0A0D3EN35	Uncharacterized protein. (349 aa)
	A0A0D3EN69	Uncharacterized protein. (517 aa)
	A0A0D3EQS1	Uncharacterized protein. (108 aa)
	A0A0D3ETT7	Uncharacterized protein. (241 aa)

Your Current Organism:

Oryza barthii

NCBI taxonomy Id: 65489
Other names: African wild rice, O. barthii, Oryza barthii A.Chev., Oryza breviligulata, Oryza breviligulata A.Chev. & Roehr.

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0D3EJS5	A0A0D3EN35	Uncharacterized protein.	Uncharacterized protein.	0.823
A0A0D3EJS5	A0A0D3EXV7	Uncharacterized protein.	Uncharacterized protein.	0.650
A0A0D3EJS5	A0A0D3EYY5	Uncharacterized protein.	Uncharacterized protein.	0.619
A0A0D3EJS5	A0A0D3F7H3	Uncharacterized protein.	Uncharacterized protein.	0.536
A0A0D3EJS5	A0A0D3FAQ5	Uncharacterized protein.	RRM domain-containing protein.	0.707
A0A0D3EJS5	A0A0D3FBF2	Uncharacterized protein.	Uncharacterized protein.	0.536
A0A0D3EJS5	A0A0D3FDK3	Uncharacterized protein.	Uncharacterized protein.	0.619
A0A0D3EJS5	A0A0D3FGL4	Uncharacterized protein.	RRM domain-containing protein.	0.542
A0A0D3EJS5	A0A0D3FIC6	Uncharacterized protein.	Uncharacterized protein.	0.823
A0A0D3EJS5	A0A0D3FIS2	Uncharacterized protein.	RRM domain-containing protein.	0.858
A0A0D3EJS5	A0A0D3FJ19	Uncharacterized protein.	RRM domain-containing protein.	0.693
A0A0D3EJS5	A0A0D3FJA2	Uncharacterized protein.	RRM domain-containing protein.	0.872
A0A0D3EJS5	A0A0D3FNY1	Uncharacterized protein.	DUF3700 domain-containing protein.	0.638
A0A0D3EJS5	A0A0D3FS23	Uncharacterized protein.	Uncharacterized protein.	0.813
A0A0D3EJS5	A0A0D3G6P1	Uncharacterized protein.	Uncharacterized protein.	0.823
A0A0D3EJS5	A0A0D3GDN1	Uncharacterized protein.	Uncharacterized protein.	0.536
A0A0D3EJS5	A0A0D3GEB4	Uncharacterized protein.	RRM domain-containing protein.	0.707
A0A0D3EJS5	A0A0D3GG99	Uncharacterized protein.	Uncharacterized protein.	0.436
A0A0D3EJS5	A0A0D3GTR3	Uncharacterized protein.	RRM domain-containing protein.	0.872
A0A0D3EJS5	A0A0D3GTX7	Uncharacterized protein.	RRM domain-containing protein.	0.693