43 items (Oryza barthii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0D3ET68	Uncharacterized protein. (266 aa)
	A0A0D3HWE1	Uncharacterized protein. (225 aa)
	A0A0D3HVF3	Uncharacterized protein. (133 aa)
	A0A0D3HRQ5	Uncharacterized protein. (236 aa)
	A0A0D3HMU1	GDT1 family protein. (212 aa)
	A0A0D3HLJ5	Uncharacterized protein. (104 aa)
	A0A0D3HGQ0	Uncharacterized protein. (109 aa)
	A0A0D3HCB4	Uncharacterized protein. (109 aa)
	A0A0D3H759	Glutamate receptor; Glutamate-gated receptor that probably acts as non-selective cation channel; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family. (950 aa)
	A0A0D3H749	Uncharacterized protein; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family. (1847 aa)
	A0A0D3H747	Glutamate receptor; Glutamate-gated receptor that probably acts as non-selective cation channel; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family. (952 aa)
	A0A0D3H744	Glutamate receptor; Glutamate-gated receptor that probably acts as non-selective cation channel; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family. (933 aa)
	A0A0D3H739	Glutamate receptor; Glutamate-gated receptor that probably acts as non-selective cation channel; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family. (969 aa)
	A0A0D3H737	Glutamate receptor; Glutamate-gated receptor that probably acts as non-selective cation channel; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family. (843 aa)
	A0A0D3H0W0	Adenylyl cyclase-associated protein; Belongs to the CAP family. (464 aa)
	A0A0D3GLA3	PBPe domain-containing protein; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family. (1116 aa)
	A0A0D3GJY3	Glutamate receptor; Glutamate-gated receptor that probably acts as non-selective cation channel; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family. (934 aa)
	A0A0D3GDP3	Uncharacterized protein; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family. (1426 aa)
	A0A0D3GDP1	Uncharacterized protein; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family. (1277 aa)
	A0A0D3GDP0	PBPe domain-containing protein; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family. (639 aa)
	A0A0D3GDN7	Glutamate receptor; Glutamate-gated receptor that probably acts as non-selective cation channel; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family. (774 aa)
	A0A0D3GDN6	Uncharacterized protein. (109 aa)
	A0A0D3GD01	PBPe domain-containing protein; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family. (687 aa)
	A0A0D3GA59	Uncharacterized protein. (204 aa)
	A0A0D3FPB0	Cyclic nucleotide-binding domain-containing protein. (773 aa)
	A0A0D3FNE4	Adenylyl cyclase-associated protein; Belongs to the CAP family. (462 aa)
	A0A0D3FLG6	Uncharacterized protein. (152 aa)
	A0A0D3FGE2	Uncharacterized protein. (193 aa)
	A0A0D3FFA0	Uncharacterized protein. (198 aa)
	A0A0D3FBE2	Glutamate receptor; Glutamate-gated receptor that probably acts as non-selective cation channel; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family. (984 aa)
	A0A0D3F8Q4	Uncharacterized protein. (119 aa)
	A0A0D3F565	Uncharacterized protein. (141 aa)
	A0A0D3F562	Uncharacterized protein. (122 aa)
	A0A0D3F3V7	EF-hand domain-containing protein. (74 aa)
	A0A0D3F3V5	EF-hand domain-containing protein. (97 aa)
	A0A0D3F3T7	PBPe domain-containing protein; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family. (520 aa)
	A0A0D3EZU3	Peptidylprolyl isomerase. (1028 aa)
	A0A0D3EYA5	Uncharacterized protein. (111 aa)
	A0A0D3ESH0	Uncharacterized protein. (655 aa)
	A0A0D3EQV0	Uncharacterized protein. (301 aa)
	A0A0D3ENP9	Uncharacterized protein. (116 aa)
	A0A0D3ELX7	Uncharacterized protein. (137 aa)
	A0A0D3EKT1	Uncharacterized protein. (185 aa)

Your Current Organism:

Oryza barthii

NCBI taxonomy Id: 65489
Other names: African wild rice, O. barthii, Oryza barthii A.Chev., Oryza breviligulata, Oryza breviligulata A.Chev. & Roehr.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0D3EQV0	A0A0D3ESH0	Uncharacterized protein.	Uncharacterized protein.	0.728
A0A0D3ESH0	A0A0D3EQV0	Uncharacterized protein.	Uncharacterized protein.	0.728
A0A0D3ESH0	A0A0D3ET68	Uncharacterized protein.	Uncharacterized protein.	0.728
A0A0D3ESH0	A0A0D3F3V5	Uncharacterized protein.	EF-hand domain-containing protein.	0.728
A0A0D3ESH0	A0A0D3F3V7	Uncharacterized protein.	EF-hand domain-containing protein.	0.728
A0A0D3ESH0	A0A0D3F562	Uncharacterized protein.	Uncharacterized protein.	0.728
A0A0D3ESH0	A0A0D3F565	Uncharacterized protein.	Uncharacterized protein.	0.728
A0A0D3ESH0	A0A0D3FLG6	Uncharacterized protein.	Uncharacterized protein.	0.728
A0A0D3ESH0	A0A0D3FPB0	Uncharacterized protein.	Cyclic nucleotide-binding domain-containing protein.	0.656
A0A0D3ESH0	A0A0D3GA59	Uncharacterized protein.	Uncharacterized protein.	0.728
A0A0D3ESH0	A0A0D3HGQ0	Uncharacterized protein.	Uncharacterized protein.	0.728
A0A0D3ESH0	A0A0D3HRQ5	Uncharacterized protein.	Uncharacterized protein.	0.728
A0A0D3ESH0	A0A0D3HWE1	Uncharacterized protein.	Uncharacterized protein.	0.728
A0A0D3ET68	A0A0D3ESH0	Uncharacterized protein.	Uncharacterized protein.	0.728
A0A0D3ET68	A0A0D3HGQ0	Uncharacterized protein.	Uncharacterized protein.	0.438
A0A0D3F3V5	A0A0D3ESH0	EF-hand domain-containing protein.	Uncharacterized protein.	0.728
A0A0D3F3V7	A0A0D3ESH0	EF-hand domain-containing protein.	Uncharacterized protein.	0.728
A0A0D3F3V7	A0A0D3F562	EF-hand domain-containing protein.	Uncharacterized protein.	0.539
A0A0D3F562	A0A0D3ESH0	Uncharacterized protein.	Uncharacterized protein.	0.728
A0A0D3F562	A0A0D3F3V7	Uncharacterized protein.	EF-hand domain-containing protein.	0.539