12 items (Oryza barthii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0D3HQN4	Uncharacterized protein. (374 aa)
	A0A0D3HSM4	Uncharacterized protein. (343 aa)
	A0A0D3EMJ6	Uncharacterized protein. (263 aa)
	A0A0D3FCG9	Uncharacterized protein. (205 aa)
	A0A0D3FGS0	Bac_surface_Ag domain-containing protein. (1273 aa)
	A0A0D3FHJ2	Uncharacterized protein. (188 aa)
	A0A0D3FN22	TPR_REGION domain-containing protein. (586 aa)
	A0A0D3G5X8	ULP_PROTEASE domain-containing protein. (452 aa)
	A0A0D3GJ37	Protein kinase domain-containing protein. (644 aa)
	A0A0D3GLT7	Uncharacterized protein. (272 aa)
	A0A0D3H2P8	ANK_REP_REGION domain-containing protein. (329 aa)
	A0A0D3HHG9	Uncharacterized protein. (1335 aa)

Your Current Organism:

Oryza barthii

NCBI taxonomy Id: 65489
Other names: African wild rice, O. barthii, Oryza barthii A.Chev., Oryza breviligulata, Oryza breviligulata A.Chev. & Roehr.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0D3EMJ6	A0A0D3HSM4	Uncharacterized protein.	Uncharacterized protein.	0.471
A0A0D3FGS0	A0A0D3FN22	Bac_surface_Ag domain-containing protein.	TPR_REGION domain-containing protein.	0.613
A0A0D3FGS0	A0A0D3H2P8	Bac_surface_Ag domain-containing protein.	ANK_REP_REGION domain-containing protein.	0.415
A0A0D3FHJ2	A0A0D3HSM4	Uncharacterized protein.	Uncharacterized protein.	0.464
A0A0D3FN22	A0A0D3FGS0	TPR_REGION domain-containing protein.	Bac_surface_Ag domain-containing protein.	0.613
A0A0D3FN22	A0A0D3G5X8	TPR_REGION domain-containing protein.	ULP_PROTEASE domain-containing protein.	0.613
A0A0D3FN22	A0A0D3H2P8	TPR_REGION domain-containing protein.	ANK_REP_REGION domain-containing protein.	0.687
A0A0D3FN22	A0A0D3HHG9	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.613
A0A0D3FN22	A0A0D3HQN4	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.613
A0A0D3G5X8	A0A0D3FN22	ULP_PROTEASE domain-containing protein.	TPR_REGION domain-containing protein.	0.613
A0A0D3G5X8	A0A0D3H2P8	ULP_PROTEASE domain-containing protein.	ANK_REP_REGION domain-containing protein.	0.415
A0A0D3H2P8	A0A0D3FGS0	ANK_REP_REGION domain-containing protein.	Bac_surface_Ag domain-containing protein.	0.415
A0A0D3H2P8	A0A0D3FN22	ANK_REP_REGION domain-containing protein.	TPR_REGION domain-containing protein.	0.687
A0A0D3H2P8	A0A0D3G5X8	ANK_REP_REGION domain-containing protein.	ULP_PROTEASE domain-containing protein.	0.415
A0A0D3H2P8	A0A0D3HHG9	ANK_REP_REGION domain-containing protein.	Uncharacterized protein.	0.415
A0A0D3H2P8	A0A0D3HQN4	ANK_REP_REGION domain-containing protein.	Uncharacterized protein.	0.415
A0A0D3HHG9	A0A0D3FN22	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.613
A0A0D3HHG9	A0A0D3H2P8	Uncharacterized protein.	ANK_REP_REGION domain-containing protein.	0.415
A0A0D3HQN4	A0A0D3FN22	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.613
A0A0D3HQN4	A0A0D3H2P8	Uncharacterized protein.	ANK_REP_REGION domain-containing protein.	0.415