36 items (Oryza barthii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0D3EKE4	Spatacsin_C domain-containing protein. (2973 aa)
	A0A0D3EL03	Uncharacterized protein. (602 aa)
	A0A0D3ERU6	Uncharacterized protein. (924 aa)
	A0A0D3ESH0	Uncharacterized protein. (655 aa)
	A0A0D3ET07	Chloride channel protein. (619 aa)
	A0A0D3ETD7	Uncharacterized protein. (565 aa)
	A0A0D3EU56	Cyclic nucleotide-binding domain-containing protein. (491 aa)
	A0A0D3EVU6	Uncharacterized protein. (296 aa)
	A0A0D3EWW8	Chloride channel protein; Belongs to the chloride channel (TC 2.A.49) family. (800 aa)
	A0A0D3EY10	Uncharacterized protein. (1023 aa)
	A0A0D3F314	Uncharacterized protein. (718 aa)
	A0A0D3F6F7	Chloride channel protein; Belongs to the chloride channel (TC 2.A.49) family. (804 aa)
	A0A0D3F6Q5	Photolyase/cryptochrome alpha/beta domain-containing protein. (719 aa)
	A0A0D3F9T3	Chloride channel protein. (603 aa)
	A0A0D3FC28	Aldo_ket_red domain-containing protein. (328 aa)
	A0A0D3FCG9	Uncharacterized protein. (205 aa)
	A0A0D3FMR8	Chloride channel protein. (758 aa)
	A0A0D3FNB0	Uncharacterized protein. (241 aa)
	A0A0D3FRJ5	Uncharacterized protein. (234 aa)
	A0A0D3FS09	KHA domain-containing protein. (465 aa)
	A0A0D3FW78	Chloride channel protein; Belongs to the chloride channel (TC 2.A.49) family. (801 aa)
	A0A0D3FWB1	Uncharacterized protein. (706 aa)
	A0A0D3FWH7	Photolyase/cryptochrome alpha/beta domain-containing protein. (700 aa)
	A0A0D3G0E8	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. (1198 aa)
	A0A0D3G0V6	Chloride channel protein; Belongs to the chloride channel (TC 2.A.49) family. (808 aa)
	A0A0D3G7Y8	Uncharacterized protein. (841 aa)
	A0A0D3GAP0	UBIQUITIN_CONJUGAT_2 domain-containing protein. (903 aa)
	A0A0D3GEX3	Uncharacterized protein. (862 aa)
	A0A0D3GEY8	Uncharacterized protein. (591 aa)
	A0A0D3GMV1	Uncharacterized protein. (848 aa)
	A0A0D3GYP5	Chloride channel protein. (817 aa)
	A0A0D3GZW0	Uncharacterized protein. (624 aa)
	A0A0D3H0F9	Uncharacterized protein. (84 aa)
	A0A0D3H1S4	Chloride channel protein. (595 aa)
	A0A0D3H5M7	Uncharacterized protein. (627 aa)
	A0A0D3HU12	Chloride channel protein. (795 aa)

Your Current Organism:

Oryza barthii

NCBI taxonomy Id: 65489
Other names: African wild rice, O. barthii, Oryza barthii A.Chev., Oryza breviligulata, Oryza breviligulata A.Chev. & Roehr.

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0D3EL03	A0A0D3ESH0	Uncharacterized protein.	Uncharacterized protein.	0.522
A0A0D3ERU6	A0A0D3ESH0	Uncharacterized protein.	Uncharacterized protein.	0.617
A0A0D3ERU6	A0A0D3ETD7	Uncharacterized protein.	Uncharacterized protein.	0.825
A0A0D3ERU6	A0A0D3FS09	Uncharacterized protein.	KHA domain-containing protein.	0.825
A0A0D3ERU6	A0A0D3GEY8	Uncharacterized protein.	Uncharacterized protein.	0.825
A0A0D3ESH0	A0A0D3EL03	Uncharacterized protein.	Uncharacterized protein.	0.522
A0A0D3ESH0	A0A0D3ERU6	Uncharacterized protein.	Uncharacterized protein.	0.617
A0A0D3ESH0	A0A0D3ETD7	Uncharacterized protein.	Uncharacterized protein.	0.522
A0A0D3ESH0	A0A0D3EU56	Uncharacterized protein.	Cyclic nucleotide-binding domain-containing protein.	0.522
A0A0D3ESH0	A0A0D3F314	Uncharacterized protein.	Uncharacterized protein.	0.522
A0A0D3ESH0	A0A0D3FS09	Uncharacterized protein.	KHA domain-containing protein.	0.522
A0A0D3ESH0	A0A0D3FWB1	Uncharacterized protein.	Uncharacterized protein.	0.552
A0A0D3ESH0	A0A0D3G7Y8	Uncharacterized protein.	Uncharacterized protein.	0.618
A0A0D3ESH0	A0A0D3GEX3	Uncharacterized protein.	Uncharacterized protein.	0.634
A0A0D3ESH0	A0A0D3GEY8	Uncharacterized protein.	Uncharacterized protein.	0.522
A0A0D3ESH0	A0A0D3GMV1	Uncharacterized protein.	Uncharacterized protein.	0.552
A0A0D3ET07	A0A0D3EWW8	Chloride channel protein.	Chloride channel protein; Belongs to the chloride channel (TC 2.A.49) family.	0.557
A0A0D3ET07	A0A0D3F6F7	Chloride channel protein.	Chloride channel protein; Belongs to the chloride channel (TC 2.A.49) family.	0.552
A0A0D3ET07	A0A0D3FMR8	Chloride channel protein.	Chloride channel protein.	0.647
A0A0D3ET07	A0A0D3FW78	Chloride channel protein.	Chloride channel protein; Belongs to the chloride channel (TC 2.A.49) family.	0.552