(16 nodes) Starch binding network (Oryza barthii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0D3G0L2	Uncharacterized protein. (1199 aa)
	A0A0D3FMK4	AMPK1_CBM domain-containing protein. (327 aa)
	A0A0D3FH96	CBM20 domain-containing protein. (681 aa)
	A0A0D3FDG4	Uncharacterized protein. (430 aa)
	A0A0D3FCR4	TYR_PHOSPHATASE_2 domain-containing protein. (352 aa)
	A0A0D3F0D9	AMPK1_CBM domain-containing protein. (306 aa)
	A0A0D3EWG2	CBM20 domain-containing protein. (387 aa)
	A0A0D3HNG8	Uncharacterized protein. (512 aa)
	A0A0D3HQL7	Uncharacterized protein. (317 aa)
	A0A0D3HHD9	Uncharacterized protein. (271 aa)
	A0A0D3G8B0	CBM20 domain-containing protein. (383 aa)
	A0A0D3G3M0	CBM20 domain-containing protein. (789 aa)
	A0A0D3HTJ4	CBM20 domain-containing protein. (1174 aa)
	A0A0D3GUM6	Uncharacterized protein. (953 aa)
	A0A0D3GYX9	CBM20 domain-containing protein. (1021 aa)
	A0A0D3GX47	Uncharacterized protein. (1843 aa)

Your Current Organism:

Oryza barthii

NCBI taxonomy Id: 65489
Other names: African wild rice, O. barthii, Oryza barthii A.Chev., Oryza breviligulata, Oryza breviligulata A.Chev. & Roehr.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0D3EWG2	A0A0D3G0L2	CBM20 domain-containing protein.	Uncharacterized protein.	0.790
A0A0D3EWG2	A0A0D3GUM6	CBM20 domain-containing protein.	Uncharacterized protein.	0.859
A0A0D3EWG2	A0A0D3GX47	CBM20 domain-containing protein.	Uncharacterized protein.	0.790
A0A0D3F0D9	A0A0D3FCR4	AMPK1_CBM domain-containing protein.	TYR_PHOSPHATASE_2 domain-containing protein.	0.552
A0A0D3F0D9	A0A0D3FH96	AMPK1_CBM domain-containing protein.	CBM20 domain-containing protein.	0.472
A0A0D3F0D9	A0A0D3G3M0	AMPK1_CBM domain-containing protein.	CBM20 domain-containing protein.	0.472
A0A0D3F0D9	A0A0D3GUM6	AMPK1_CBM domain-containing protein.	Uncharacterized protein.	0.423
A0A0D3F0D9	A0A0D3HHD9	AMPK1_CBM domain-containing protein.	Uncharacterized protein.	0.459
A0A0D3F0D9	A0A0D3HQL7	AMPK1_CBM domain-containing protein.	Uncharacterized protein.	0.459
A0A0D3FCR4	A0A0D3F0D9	TYR_PHOSPHATASE_2 domain-containing protein.	AMPK1_CBM domain-containing protein.	0.552
A0A0D3FCR4	A0A0D3FH96	TYR_PHOSPHATASE_2 domain-containing protein.	CBM20 domain-containing protein.	0.540
A0A0D3FCR4	A0A0D3G3M0	TYR_PHOSPHATASE_2 domain-containing protein.	CBM20 domain-containing protein.	0.540
A0A0D3FCR4	A0A0D3GUM6	TYR_PHOSPHATASE_2 domain-containing protein.	Uncharacterized protein.	0.590
A0A0D3FCR4	A0A0D3HTJ4	TYR_PHOSPHATASE_2 domain-containing protein.	CBM20 domain-containing protein.	0.496
A0A0D3FH96	A0A0D3F0D9	CBM20 domain-containing protein.	AMPK1_CBM domain-containing protein.	0.472
A0A0D3FH96	A0A0D3FCR4	CBM20 domain-containing protein.	TYR_PHOSPHATASE_2 domain-containing protein.	0.540
A0A0D3FH96	A0A0D3FMK4	CBM20 domain-containing protein.	AMPK1_CBM domain-containing protein.	0.472
A0A0D3FH96	A0A0D3G3M0	CBM20 domain-containing protein.	CBM20 domain-containing protein.	0.859
A0A0D3FMK4	A0A0D3FH96	AMPK1_CBM domain-containing protein.	CBM20 domain-containing protein.	0.472
A0A0D3FMK4	A0A0D3G3M0	AMPK1_CBM domain-containing protein.	CBM20 domain-containing protein.	0.472