73 items (Oryza barthii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0D3FW30	Uncharacterized protein; Belongs to the GST superfamily. (368 aa)
	A0A0D3HX59	Uncharacterized protein. (160 aa)
	A0A0D3HX57	Uncharacterized protein. (186 aa)
	A0A0D3HQN4	Uncharacterized protein. (374 aa)
	A0A0D3HQF0	Protein kinase domain-containing protein. (1046 aa)
	A0A0D3HPN7	AAA domain-containing protein. (1190 aa)
	A0A0D3HMF8	Uncharacterized protein. (382 aa)
	A0A0D3HJY4	Uncharacterized protein. (76 aa)
	A0A0D3HHG9	Uncharacterized protein. (1335 aa)
	A0A0D3HH71	HTH myb-type domain-containing protein. (872 aa)
	A0A0D3HGL7	PKS_ER domain-containing protein. (341 aa)
	A0A0D3H2U0	Uncharacterized protein. (356 aa)
	A0A0D3GQR5	ZnF_CDGSH domain-containing protein. (109 aa)
	A0A0D3GKT5	Uncharacterized protein; Belongs to the AAA ATPase family. (260 aa)
	A0A0D3GIC9	Uncharacterized protein. (431 aa)
	A0A0D3GEX4	ThiF domain-containing protein. (458 aa)
	A0A0D3GEG1	AAA domain-containing protein. (949 aa)
	A0A0D3GDA0	Metaxin; Involved in transport of proteins into the mitochondrion. Belongs to the metaxin family. (337 aa)
	A0A0D3GBH7	AAA domain-containing protein; Belongs to the AAA ATPase family. (484 aa)
	A0A0D3GBC6	AAA domain-containing protein. (858 aa)
	A0A0D3GBB6	Uncharacterized protein. (60 aa)
	A0A0D3GB70	Uncharacterized protein. (744 aa)
	A0A0D3GAR6	Uncharacterized protein. (363 aa)
	A0A0D3G9M4	Bac_surface_Ag domain-containing protein. (361 aa)
	A0A0D3G9K4	Zeta_toxin domain-containing protein. (497 aa)
	A0A0D3G9G0	Uncharacterized protein. (419 aa)
	A0A0D3G8U0	Uncharacterized protein. (520 aa)
	A0A0D3G726	Uncharacterized protein. (154 aa)
	A0A0D3G6Y2	Phosphotransferase. (442 aa)
	A0A0D3G5X8	ULP_PROTEASE domain-containing protein. (452 aa)
	A0A0D3G290	DUF1664 domain-containing protein. (345 aa)
	A0A0D3FXU9	Uncharacterized protein. (411 aa)
	A0A0D3FVV4	FAD_binding_3 domain-containing protein. (472 aa)
	A0A0D3FVN5	Uncharacterized protein. (423 aa)
	A0A0D3FTP5	CYTH domain-containing protein. (969 aa)
	A0A0D3FQI4	EF-hand domain-containing protein. (235 aa)
	A0A0D3FQI3	Mitochondrial Rho GTPase. (642 aa)
	A0A0D3FLH9	Zeta_toxin domain-containing protein. (525 aa)
	A0A0D3FKR7	Uncharacterized protein. (92 aa)
	A0A0D3FJ37	Uncharacterized protein. (533 aa)
	A0A0D3FJ36	Uncharacterized protein. (604 aa)
	A0A0D3FIV3	Uncharacterized protein. (179 aa)
	A0A0D3FIL4	Mitochondrial fission 1 protein; Component of the peroxisomal and mitochondrial division machineries. Plays a role in promoting the fission of mitochondria and peroxisomes. (173 aa)
	A0A0D3FIL3	Uncharacterized protein. (545 aa)
	A0A0D3FID1	AAA domain-containing protein. (1004 aa)
	A0A0D3FHX5	Uncharacterized protein. (337 aa)
	A0A0D3FGS0	Bac_surface_Ag domain-containing protein. (1273 aa)
	A0A0D3FFG5	Uncharacterized protein. (454 aa)
	A0A0D3FFD2	Uncharacterized protein; Belongs to the peptidase M16 family. (529 aa)
	A0A0D3FCM1	PKS_ER domain-containing protein. (328 aa)
	A0A0D3FAM0	TPR_REGION domain-containing protein. (571 aa)
	A0A0D3FAH7	AAA domain-containing protein. (831 aa)
	A0A0D3F9I3	CYTH domain-containing protein. (652 aa)
	A0A0D3F615	Uncharacterized protein. (421 aa)
	A0A0D3F5D8	Uncharacterized protein. (93 aa)
	A0A0D3F1Z7	POTRA domain-containing protein. (617 aa)
	A0A0D3F0Y6	Uncharacterized protein. (321 aa)
	A0A0D3F093	Uncharacterized protein. (85 aa)
	A0A0D3EYR0	Uncharacterized protein. (149 aa)
	A0A0D3EYH8	Phosphotransferase. (439 aa)
	A0A0D3EY91	PlsC domain-containing protein. (507 aa)
	A0A0D3EXZ7	Uncharacterized protein. (226 aa)
	A0A0D3EW43	Mitochondrial Rho GTPase. (639 aa)
	A0A0D3EUN6	Zeta_toxin domain-containing protein. (509 aa)
	A0A0D3EUN4	Zeta_toxin domain-containing protein. (374 aa)
	A0A0D3ETN8	Uncharacterized protein. (70 aa)
	A0A0D3ERF7	Uncharacterized protein. (80 aa)
	A0A0D3ERE0	AAA domain-containing protein. (824 aa)
	A0A0D3EMB8	Uncharacterized protein. (345 aa)
	A0A0D3ELA2	AAA domain-containing protein. (841 aa)
	A0A0D3EJG6	FAD_binding_3 domain-containing protein. (233 aa)
	A0A0D3EIU8	DUF1664 domain-containing protein. (342 aa)
	A0A0D3EIJ4	DUF1664 domain-containing protein. (330 aa)

Your Current Organism:

Oryza barthii

NCBI taxonomy Id: 65489
Other names: African wild rice, O. barthii, Oryza barthii A.Chev., Oryza breviligulata, Oryza breviligulata A.Chev. & Roehr.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0D3ELA2	A0A0D3EW43	AAA domain-containing protein.	Mitochondrial Rho GTPase.	0.406
A0A0D3ELA2	A0A0D3EYR0	AAA domain-containing protein.	Uncharacterized protein.	0.582
A0A0D3ELA2	A0A0D3FIL4	AAA domain-containing protein.	Mitochondrial fission 1 protein; Component of the peroxisomal and mitochondrial division machineries. Plays a role in promoting the fission of mitochondria and peroxisomes.	0.582
A0A0D3ELA2	A0A0D3FQI3	AAA domain-containing protein.	Mitochondrial Rho GTPase.	0.406
A0A0D3ELA2	A0A0D3FQI4	AAA domain-containing protein.	EF-hand domain-containing protein.	0.406
A0A0D3ELA2	A0A0D3FW30	AAA domain-containing protein.	Uncharacterized protein; Belongs to the GST superfamily.	0.595
A0A0D3ELA2	A0A0D3G726	AAA domain-containing protein.	Uncharacterized protein.	0.582
A0A0D3EMB8	A0A0D3EXZ7	Uncharacterized protein.	Uncharacterized protein.	0.511
A0A0D3EMB8	A0A0D3F093	Uncharacterized protein.	Uncharacterized protein.	0.956
A0A0D3EMB8	A0A0D3F1Z7	Uncharacterized protein.	POTRA domain-containing protein.	0.460
A0A0D3EMB8	A0A0D3F5D8	Uncharacterized protein.	Uncharacterized protein.	0.956
A0A0D3EMB8	A0A0D3FAM0	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.470
A0A0D3EMB8	A0A0D3FFD2	Uncharacterized protein.	Uncharacterized protein; Belongs to the peptidase M16 family.	0.472
A0A0D3EMB8	A0A0D3G8U0	Uncharacterized protein.	Uncharacterized protein.	0.896
A0A0D3EMB8	A0A0D3G9M4	Uncharacterized protein.	Bac_surface_Ag domain-containing protein.	0.882
A0A0D3EMB8	A0A0D3GBH7	Uncharacterized protein.	AAA domain-containing protein; Belongs to the AAA ATPase family.	0.447
A0A0D3EMB8	A0A0D3GDA0	Uncharacterized protein.	Metaxin; Involved in transport of proteins into the mitochondrion. Belongs to the metaxin family.	0.896
A0A0D3EMB8	A0A0D3HH71	Uncharacterized protein.	HTH myb-type domain-containing protein.	0.896
A0A0D3EMB8	A0A0D3HJY4	Uncharacterized protein.	Uncharacterized protein.	0.956
A0A0D3EMB8	A0A0D3HQF0	Uncharacterized protein.	Protein kinase domain-containing protein.	0.896