9 items (Oryza barthii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0D3GA54	Uncharacterized protein. (125 aa)
	A0A0D3FMA3	Uncharacterized protein. (1229 aa)
	A0A0D3F1F1	Uncharacterized protein. (95 aa)
	A0A0D3HDU1	Uncharacterized protein. (782 aa)
	A0A0D3ETE9	Uncharacterized protein. (156 aa)
	A0A0D3EQW4	Uncharacterized protein. (122 aa)
	A0A0D3GXZ8	Uncharacterized protein. (69 aa)
	A0A0D3FNS2	Uncharacterized protein. (214 aa)
	A0A0D3GR71	Uncharacterized protein. (699 aa)

Your Current Organism:

Oryza barthii

NCBI taxonomy Id: 65489
Other names: African wild rice, O. barthii, Oryza barthii A.Chev., Oryza breviligulata, Oryza breviligulata A.Chev. & Roehr.

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0D3EQW4	A0A0D3ETE9	Uncharacterized protein.	Uncharacterized protein.	0.819
A0A0D3EQW4	A0A0D3GA54	Uncharacterized protein.	Uncharacterized protein.	0.905
A0A0D3ETE9	A0A0D3EQW4	Uncharacterized protein.	Uncharacterized protein.	0.819
A0A0D3FNS2	A0A0D3GR71	Uncharacterized protein.	Uncharacterized protein.	0.993
A0A0D3FNS2	A0A0D3GXZ8	Uncharacterized protein.	Uncharacterized protein.	0.994
A0A0D3FNS2	A0A0D3HDU1	Uncharacterized protein.	Uncharacterized protein.	0.993
A0A0D3GA54	A0A0D3EQW4	Uncharacterized protein.	Uncharacterized protein.	0.905
A0A0D3GR71	A0A0D3FNS2	Uncharacterized protein.	Uncharacterized protein.	0.993
A0A0D3GR71	A0A0D3GXZ8	Uncharacterized protein.	Uncharacterized protein.	0.991
A0A0D3GXZ8	A0A0D3FNS2	Uncharacterized protein.	Uncharacterized protein.	0.994
A0A0D3GXZ8	A0A0D3GR71	Uncharacterized protein.	Uncharacterized protein.	0.991
A0A0D3GXZ8	A0A0D3HDU1	Uncharacterized protein.	Uncharacterized protein.	0.991
A0A0D3HDU1	A0A0D3FNS2	Uncharacterized protein.	Uncharacterized protein.	0.993
A0A0D3HDU1	A0A0D3GXZ8	Uncharacterized protein.	Uncharacterized protein.	0.991