62 items (Oryza barthii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0D3GSC6	Uncharacterized protein. (287 aa)
	A0A0D3GMJ9	TPR_REGION domain-containing protein. (547 aa)
	A0A0D3GLT7	Uncharacterized protein. (272 aa)
	A0A0D3GJ37	Protein kinase domain-containing protein. (644 aa)
	A0A0D3GI08	Uncharacterized protein; Belongs to the cytochrome P450 family. (466 aa)
	A0A0D3GI07	Uncharacterized protein; Belongs to the cytochrome P450 family. (451 aa)
	A0A0D3GI05	Uncharacterized protein; Belongs to the cytochrome P450 family. (350 aa)
	A0A0D3GI03	Uncharacterized protein; Belongs to the cytochrome P450 family. (493 aa)
	A0A0D3GI01	Uncharacterized protein; Belongs to the cytochrome P450 family. (510 aa)
	A0A0D3GCA2	Uncharacterized protein. (415 aa)
	A0A0D3GA43	Uncharacterized protein. (85 aa)
	A0A0D3G777	G domain-containing protein. (928 aa)
	A0A0D3G5X8	ULP_PROTEASE domain-containing protein. (452 aa)
	A0A0D3G3C0	AIG1-type G domain-containing protein. (1178 aa)
	A0A0D3G2G4	Uncharacterized protein. (146 aa)
	A0A0D3FW44	TPR_REGION domain-containing protein. (394 aa)
	A0A0D3FVQ7	Glycos_transf_1 domain-containing protein. (730 aa)
	A0A0D3FUU9	Uncharacterized protein. (903 aa)
	A0A0D3FRJ5	Uncharacterized protein. (234 aa)
	A0A0D3FRF7	ANK_REP_REGION domain-containing protein. (338 aa)
	A0A0D3FR18	AIG1-type G domain-containing protein. (1206 aa)
	A0A0D3FPB1	ANK_REP_REGION domain-containing protein. (243 aa)
	A0A0D3FP80	Cytochrome b5 heme-binding domain-containing protein; Belongs to the cytochrome b5 family. (196 aa)
	A0A0D3FN22	TPR_REGION domain-containing protein. (586 aa)
	A0A0D3FHJ2	Uncharacterized protein. (188 aa)
	A0A0D3FGS0	Bac_surface_Ag domain-containing protein. (1273 aa)
	A0A0D3FGP6	Glycos_transf_1 domain-containing protein. (490 aa)
	A0A0D3FG10	AIG1-type G domain-containing protein. (433 aa)
	A0A0D3FFF6	Uncharacterized protein. (476 aa)
	A0A0D3FCG9	Uncharacterized protein. (205 aa)
	A0A0D3FBQ2	Uncharacterized protein. (508 aa)
	A0A0D3FBG1	Uncharacterized protein. (531 aa)
	A0A0D3F9Q4	Uncharacterized protein. (150 aa)
	A0A0D3F9P3	Uncharacterized protein. (107 aa)
	A0A0D3F7G2	Uncharacterized protein. (369 aa)
	A0A0D3F638	Glycos_transf_1 domain-containing protein. (669 aa)
	A0A0D3F5E3	Uncharacterized protein. (479 aa)
	A0A0D3EZA0	Uncharacterized protein. (146 aa)
	A0A0D3EZ58	Uncharacterized protein. (106 aa)
	A0A0D3ENM8	AIG1-type G domain-containing protein. (5436 aa)
	A0A0D3EMJ6	Uncharacterized protein. (263 aa)
	A0A0D3ELT4	Uncharacterized protein. (425 aa)
	A0A0D3EL86	Uncharacterized protein. (250 aa)
	A0A0D3HW97	Uncharacterized protein. (1350 aa)
	A0A0D3HW94	Uncharacterized protein. (184 aa)
	A0A0D3HW76	Uncharacterized protein. (1108 aa)
	A0A0D3HVY1	Uncharacterized protein. (1209 aa)
	A0A0D3HSM4	Uncharacterized protein. (343 aa)
	A0A0D3HSC2	AIG1-type G domain-containing protein. (785 aa)
	A0A0D3HQN4	Uncharacterized protein. (374 aa)
	A0A0D3HQE6	Uncharacterized protein. (260 aa)
	A0A0D3HPZ5	Uncharacterized protein; Belongs to the glycosyl hydrolase 1 family. (649 aa)
	A0A0D3HME9	Uncharacterized protein. (197 aa)
	A0A0D3HIG8	Glycos_transf_1 domain-containing protein. (696 aa)
	A0A0D3HHG9	Uncharacterized protein. (1335 aa)
	A0A0D3HGC0	AIG1-type G domain-containing protein. (1008 aa)
	A0A0D3HFR5	Uncharacterized protein. (440 aa)
	A0A0D3H5B3	Uncharacterized protein. (328 aa)
	A0A0D3H2P8	ANK_REP_REGION domain-containing protein. (329 aa)
	A0A0D3GYP0	Uncharacterized protein. (454 aa)
	A0A0D3GY33	Uncharacterized protein. (495 aa)
	A0A0D3GUA9	Uncharacterized protein. (336 aa)

Your Current Organism:

Oryza barthii

NCBI taxonomy Id: 65489
Other names: African wild rice, O. barthii, Oryza barthii A.Chev., Oryza breviligulata, Oryza breviligulata A.Chev. & Roehr.

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0D3EL86	A0A0D3G777	Uncharacterized protein.	G domain-containing protein.	0.430
A0A0D3EL86	A0A0D3HQE6	Uncharacterized protein.	Uncharacterized protein.	0.450
A0A0D3EMJ6	A0A0D3HSM4	Uncharacterized protein.	Uncharacterized protein.	0.471
A0A0D3ENM8	A0A0D3FG10	AIG1-type G domain-containing protein.	AIG1-type G domain-containing protein.	0.876
A0A0D3ENM8	A0A0D3FGS0	AIG1-type G domain-containing protein.	Bac_surface_Ag domain-containing protein.	0.681
A0A0D3ENM8	A0A0D3G5X8	AIG1-type G domain-containing protein.	ULP_PROTEASE domain-containing protein.	0.681
A0A0D3ENM8	A0A0D3GUA9	AIG1-type G domain-containing protein.	Uncharacterized protein.	0.425
A0A0D3ENM8	A0A0D3H2P8	AIG1-type G domain-containing protein.	ANK_REP_REGION domain-containing protein.	0.458
A0A0D3ENM8	A0A0D3HHG9	AIG1-type G domain-containing protein.	Uncharacterized protein.	0.681
A0A0D3ENM8	A0A0D3HQN4	AIG1-type G domain-containing protein.	Uncharacterized protein.	0.681
A0A0D3ENM8	A0A0D3HSM4	AIG1-type G domain-containing protein.	Uncharacterized protein.	0.428
A0A0D3EZ58	A0A0D3GJ37	Uncharacterized protein.	Protein kinase domain-containing protein.	0.450
A0A0D3F638	A0A0D3FBQ2	Glycos_transf_1 domain-containing protein.	Uncharacterized protein.	0.953
A0A0D3F638	A0A0D3FFF6	Glycos_transf_1 domain-containing protein.	Uncharacterized protein.	0.752
A0A0D3F638	A0A0D3FGP6	Glycos_transf_1 domain-containing protein.	Glycos_transf_1 domain-containing protein.	0.754
A0A0D3F638	A0A0D3GYP0	Glycos_transf_1 domain-containing protein.	Uncharacterized protein.	0.838
A0A0D3F638	A0A0D3HPZ5	Glycos_transf_1 domain-containing protein.	Uncharacterized protein; Belongs to the glycosyl hydrolase 1 family.	0.955
A0A0D3F9P3	A0A0D3FRF7	Uncharacterized protein.	ANK_REP_REGION domain-containing protein.	0.466
A0A0D3F9P3	A0A0D3H2P8	Uncharacterized protein.	ANK_REP_REGION domain-containing protein.	0.543
A0A0D3F9P3	A0A0D3HQE6	Uncharacterized protein.	Uncharacterized protein.	0.475