10 items (Oryza barthii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0D3FYQ8	Uncharacterized protein. (474 aa)
	A0A0D3GV71	Hexosyltransferase; Belongs to the glycosyltransferase 8 family. (327 aa)
	A0A0D3GWN4	Uncharacterized protein. (115 aa)
	A0A0D3HGH2	Uncharacterized protein. (492 aa)
	A0A0D3H902	Uncharacterized protein. (228 aa)
	A0A0D3H2S8	Uncharacterized protein. (138 aa)
	A0A0D3FHS2	Hexosyltransferase; Belongs to the glycosyltransferase 8 family. (341 aa)
	A0A0D3FDB6	Uncharacterized protein. (437 aa)
	A0A0D3EKV1	Uncharacterized protein. (628 aa)
	A0A0D3HJ21	DNA polymerase. (1082 aa)

Your Current Organism:

Oryza barthii

NCBI taxonomy Id: 65489
Other names: African wild rice, O. barthii, Oryza barthii A.Chev., Oryza breviligulata, Oryza breviligulata A.Chev. & Roehr.

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0D3EKV1	A0A0D3FDB6	Uncharacterized protein.	Uncharacterized protein.	0.987
A0A0D3EKV1	A0A0D3GWN4	Uncharacterized protein.	Uncharacterized protein.	0.953
A0A0D3EKV1	A0A0D3H2S8	Uncharacterized protein.	Uncharacterized protein.	0.898
A0A0D3EKV1	A0A0D3H902	Uncharacterized protein.	Uncharacterized protein.	0.953
A0A0D3EKV1	A0A0D3HJ21	Uncharacterized protein.	DNA polymerase.	0.955
A0A0D3FDB6	A0A0D3EKV1	Uncharacterized protein.	Uncharacterized protein.	0.987
A0A0D3FDB6	A0A0D3FHS2	Uncharacterized protein.	Hexosyltransferase; Belongs to the glycosyltransferase 8 family.	0.866
A0A0D3FDB6	A0A0D3FYQ8	Uncharacterized protein.	Uncharacterized protein.	0.866
A0A0D3FDB6	A0A0D3GV71	Uncharacterized protein.	Hexosyltransferase; Belongs to the glycosyltransferase 8 family.	0.866
A0A0D3FDB6	A0A0D3GWN4	Uncharacterized protein.	Uncharacterized protein.	0.959
A0A0D3FDB6	A0A0D3H2S8	Uncharacterized protein.	Uncharacterized protein.	0.910
A0A0D3FDB6	A0A0D3H902	Uncharacterized protein.	Uncharacterized protein.	0.959
A0A0D3FDB6	A0A0D3HGH2	Uncharacterized protein.	Uncharacterized protein.	0.866
A0A0D3FDB6	A0A0D3HJ21	Uncharacterized protein.	DNA polymerase.	0.999
A0A0D3FHS2	A0A0D3FDB6	Hexosyltransferase; Belongs to the glycosyltransferase 8 family.	Uncharacterized protein.	0.866
A0A0D3FHS2	A0A0D3GV71	Hexosyltransferase; Belongs to the glycosyltransferase 8 family.	Hexosyltransferase; Belongs to the glycosyltransferase 8 family.	0.871
A0A0D3FHS2	A0A0D3GWN4	Hexosyltransferase; Belongs to the glycosyltransferase 8 family.	Uncharacterized protein.	0.413
A0A0D3FHS2	A0A0D3H2S8	Hexosyltransferase; Belongs to the glycosyltransferase 8 family.	Uncharacterized protein.	0.413
A0A0D3FHS2	A0A0D3H902	Hexosyltransferase; Belongs to the glycosyltransferase 8 family.	Uncharacterized protein.	0.413
A0A0D3FHS2	A0A0D3HJ21	Hexosyltransferase; Belongs to the glycosyltransferase 8 family.	DNA polymerase.	0.862