8 items (Oryza barthii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0D3F748	Elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. (467 aa)
	A0A0D3F4U3	Tr-type G domain-containing protein. (469 aa)
	A0A0D3FRE9	Elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. (453 aa)
	A0A0D3FTK2	Tr-type G domain-containing protein. (548 aa)
	A0A0D3G1R1	Uncharacterized protein. (729 aa)
	A0A0D3FZN0	Tr-type G domain-containing protein. (650 aa)
	A0A0D3FEJ1	Uncharacterized protein. (918 aa)
	A0A0D3FEJ0	Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. (447 aa)

Your Current Organism:

Oryza barthii

NCBI taxonomy Id: 65489
Other names: African wild rice, O. barthii, Oryza barthii A.Chev., Oryza breviligulata, Oryza breviligulata A.Chev. & Roehr.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0D3F4U3	A0A0D3FEJ0	Tr-type G domain-containing protein.	Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.	0.656
A0A0D3F4U3	A0A0D3FEJ1	Tr-type G domain-containing protein.	Uncharacterized protein.	0.658
A0A0D3F748	A0A0D3FRE9	Elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.	Elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.	0.938
A0A0D3FEJ0	A0A0D3F4U3	Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.	Tr-type G domain-containing protein.	0.656
A0A0D3FEJ0	A0A0D3FTK2	Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.	Tr-type G domain-containing protein.	0.651
A0A0D3FEJ0	A0A0D3FZN0	Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.	Tr-type G domain-containing protein.	0.515
A0A0D3FEJ0	A0A0D3G1R1	Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.	Uncharacterized protein.	0.505
A0A0D3FEJ1	A0A0D3F4U3	Uncharacterized protein.	Tr-type G domain-containing protein.	0.658
A0A0D3FEJ1	A0A0D3FTK2	Uncharacterized protein.	Tr-type G domain-containing protein.	0.656
A0A0D3FEJ1	A0A0D3FZN0	Uncharacterized protein.	Tr-type G domain-containing protein.	0.523
A0A0D3FEJ1	A0A0D3G1R1	Uncharacterized protein.	Uncharacterized protein.	0.526
A0A0D3FRE9	A0A0D3F748	Elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.	Elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.	0.938
A0A0D3FTK2	A0A0D3FEJ0	Tr-type G domain-containing protein.	Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.	0.651
A0A0D3FTK2	A0A0D3FEJ1	Tr-type G domain-containing protein.	Uncharacterized protein.	0.656
A0A0D3FZN0	A0A0D3FEJ0	Tr-type G domain-containing protein.	Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.	0.515
A0A0D3FZN0	A0A0D3FEJ1	Tr-type G domain-containing protein.	Uncharacterized protein.	0.523
A0A0D3FZN0	A0A0D3G1R1	Tr-type G domain-containing protein.	Uncharacterized protein.	0.939
A0A0D3G1R1	A0A0D3FEJ0	Uncharacterized protein.	Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.	0.505
A0A0D3G1R1	A0A0D3FEJ1	Uncharacterized protein.	Uncharacterized protein.	0.526
A0A0D3G1R1	A0A0D3FZN0	Uncharacterized protein.	Tr-type G domain-containing protein.	0.939