24 items (Oryza barthii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

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protein homology

Your Input:
	A0A0D3FG13	Small nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. (132 aa)
	A0A0D3F5J1	Sm domain-containing protein. (97 aa)
	A0A0D3F1G6	Sm domain-containing protein. (66 aa)
	A0A0D3F050	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (176 aa)
	A0A0D3EZH7	Small nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. (132 aa)
	A0A0D3EZ40	Small nuclear ribonucleoprotein Sm D2. (105 aa)
	LSM3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (85 aa)
	LSM5	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (89 aa)
	LSM4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (133 aa)
	A0A0D3HPK6	Sm domain-containing protein. (86 aa)
	A0A0D3GWX6	Sm domain-containing protein. (98 aa)
	A0A0D3GWD6	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (215 aa)
	A0A0D3GTD9	Small nuclear ribonucleoprotein G. (81 aa)
	A0A0D3GJW0	Sm domain-containing protein. (116 aa)
	A0A0D3GDZ5	Mechanosensitive ion channel protein. (745 aa)
	LSM8	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (99 aa)
	A0A0D3G5X6	Small nuclear ribonucleoprotein Sm D2. (106 aa)
	A0A0D3FZA4	Uncharacterized protein. (540 aa)
	A0A0D3FWW6	Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family. (96 aa)
	LSM1	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation. (129 aa)
	A0A0D3FV54	Sm domain-containing protein. (90 aa)
	A0A0D3FK62	Uncharacterized protein. (587 aa)
	A0A0D3FJQ5	Small nuclear ribonucleoprotein G. (80 aa)
	A0A0D3F8X1	Uncharacterized protein. (510 aa)

Your Current Organism:

Oryza barthii

NCBI taxonomy Id: 65489
Other names: African wild rice, O. barthii, Oryza barthii A.Chev., Oryza breviligulata, Oryza breviligulata A.Chev. & Roehr.

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A0D3EZ40	A0A0D3EZH7	A0A0D3EZ40	A0A0D3EZH7	Small nuclear ribonucleoprotein Sm D2.	Small nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome.	0.999
A0A0D3EZ40	A0A0D3F050	A0A0D3EZ40	A0A0D3F050	Small nuclear ribonucleoprotein Sm D2.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.998
A0A0D3EZ40	A0A0D3F1G6	A0A0D3EZ40	A0A0D3F1G6	Small nuclear ribonucleoprotein Sm D2.	Sm domain-containing protein.	0.999
A0A0D3EZ40	A0A0D3F5J1	A0A0D3EZ40	A0A0D3F5J1	Small nuclear ribonucleoprotein Sm D2.	Sm domain-containing protein.	0.964
A0A0D3EZ40	A0A0D3FG13	A0A0D3EZ40	A0A0D3FG13	Small nuclear ribonucleoprotein Sm D2.	Small nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome.	0.999
A0A0D3EZ40	A0A0D3FJQ5	A0A0D3EZ40	A0A0D3FJQ5	Small nuclear ribonucleoprotein Sm D2.	Small nuclear ribonucleoprotein G.	0.999
A0A0D3EZ40	A0A0D3FV54	A0A0D3EZ40	A0A0D3FV54	Small nuclear ribonucleoprotein Sm D2.	Sm domain-containing protein.	0.964
A0A0D3EZ40	A0A0D3FWW6	A0A0D3EZ40	A0A0D3FWW6	Small nuclear ribonucleoprotein Sm D2.	Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family.	0.999
A0A0D3EZ40	A0A0D3GTD9	A0A0D3EZ40	A0A0D3GTD9	Small nuclear ribonucleoprotein Sm D2.	Small nuclear ribonucleoprotein G.	0.998
A0A0D3EZ40	A0A0D3GWD6	A0A0D3EZ40	A0A0D3GWD6	Small nuclear ribonucleoprotein Sm D2.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.998
A0A0D3EZ40	A0A0D3GWX6	A0A0D3EZ40	A0A0D3GWX6	Small nuclear ribonucleoprotein Sm D2.	Sm domain-containing protein.	0.994
A0A0D3EZ40	A0A0D3HPK6	A0A0D3EZ40	A0A0D3HPK6	Small nuclear ribonucleoprotein Sm D2.	Sm domain-containing protein.	0.999
A0A0D3EZ40	LSM1	A0A0D3EZ40	A0A0D3FWC1	Small nuclear ribonucleoprotein Sm D2.	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	0.614
A0A0D3EZ40	LSM3	A0A0D3EZ40	A0A0D3EWP7	Small nuclear ribonucleoprotein Sm D2.	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.996
A0A0D3EZ40	LSM4	A0A0D3EZ40	A0A0D3ELX6	Small nuclear ribonucleoprotein Sm D2.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.983
A0A0D3EZ40	LSM5	A0A0D3EZ40	A0A0D3EPY2	Small nuclear ribonucleoprotein Sm D2.	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	0.984
A0A0D3EZ40	LSM8	A0A0D3EZ40	A0A0D3GBM9	Small nuclear ribonucleoprotein Sm D2.	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.987
A0A0D3EZH7	A0A0D3EZ40	A0A0D3EZH7	A0A0D3EZ40	Small nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome.	Small nuclear ribonucleoprotein Sm D2.	0.999
A0A0D3EZH7	A0A0D3F050	A0A0D3EZH7	A0A0D3F050	Small nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.997
A0A0D3EZH7	A0A0D3F1G6	A0A0D3EZH7	A0A0D3F1G6	Small nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome.	Sm domain-containing protein.	0.998