18 items (Oryza barthii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0D3EWG3	Uncharacterized protein. (812 aa)
	A0A0D3F820	Uncharacterized protein. (969 aa)
	A0A0D3FD49	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily. (1900 aa)
	A0A0D3FKT1	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily. (1336 aa)
	A0A0D3FP30	Uncharacterized protein. (1184 aa)
	A0A0D3FY81	Uncharacterized protein. (946 aa)
	A0A0D3G3A9	Uncharacterized protein. (585 aa)
	A0A0D3G5C3	Uncharacterized protein. (404 aa)
	A0A0D3G5T6	DRBM domain-containing protein. (763 aa)
	A0A0D3GGG4	Uncharacterized protein. (299 aa)
	A0A0D3GZS3	Uncharacterized protein. (319 aa)
	A0A0D3H6V9	Uncharacterized protein. (327 aa)
	A0A0D3H8Q9	Uncharacterized protein. (357 aa)
	A0A0D3HET1	Uncharacterized protein. (514 aa)
	A0A0D3HQJ2	Uncharacterized protein. (1365 aa)
	A0A0D3HHB2	DRBM domain-containing protein. (479 aa)
	A0A0D3EIZ4	Uncharacterized protein. (1247 aa)
	A0A0D3EUJ6	Uncharacterized protein. (449 aa)

Your Current Organism:

Oryza barthii

NCBI taxonomy Id: 65489
Other names: African wild rice, O. barthii, Oryza barthii A.Chev., Oryza breviligulata, Oryza breviligulata A.Chev. & Roehr.

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0D3EIZ4	A0A0D3FP30	Uncharacterized protein.	Uncharacterized protein.	0.936
A0A0D3EUJ6	A0A0D3FD49	Uncharacterized protein.	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	0.568
A0A0D3EUJ6	A0A0D3FKT1	Uncharacterized protein.	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	0.559
A0A0D3EUJ6	A0A0D3H6V9	Uncharacterized protein.	Uncharacterized protein.	0.760
A0A0D3F820	A0A0D3FD49	Uncharacterized protein.	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	0.420
A0A0D3FD49	A0A0D3EUJ6	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	Uncharacterized protein.	0.568
A0A0D3FD49	A0A0D3F820	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	Uncharacterized protein.	0.420
A0A0D3FD49	A0A0D3FY81	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	Uncharacterized protein.	0.420
A0A0D3FD49	A0A0D3G3A9	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	Uncharacterized protein.	0.418
A0A0D3FD49	A0A0D3GZS3	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	Uncharacterized protein.	0.551
A0A0D3FD49	A0A0D3H8Q9	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	Uncharacterized protein.	0.418
A0A0D3FD49	A0A0D3HET1	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	Uncharacterized protein.	0.577
A0A0D3FD49	A0A0D3HHB2	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	DRBM domain-containing protein.	0.551
A0A0D3FKT1	A0A0D3EUJ6	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	Uncharacterized protein.	0.559
A0A0D3FKT1	A0A0D3G3A9	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	Uncharacterized protein.	0.410
A0A0D3FKT1	A0A0D3H8Q9	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	Uncharacterized protein.	0.410
A0A0D3FKT1	A0A0D3HET1	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	Uncharacterized protein.	0.527
A0A0D3FP30	A0A0D3EIZ4	Uncharacterized protein.	Uncharacterized protein.	0.936
A0A0D3FY81	A0A0D3FD49	Uncharacterized protein.	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	0.420
A0A0D3G3A9	A0A0D3FD49	Uncharacterized protein.	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	0.418