(11 nodes) Pre-ATP-grasp domain superfamily network (Oryza barthii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0D3EKQ8	ATP-grasp domain-containing protein. (565 aa)
	A0A0D3GX44	ATP-grasp domain-containing protein. (526 aa)
	A0A0D3GVA0	Uncharacterized protein. (880 aa)
	A0A0D3HPC9	Glutathione synthetase. (475 aa)
	A0A0D3HCS4	Uncharacterized protein. (2302 aa)
	A0A0D3G5L3	Uncharacterized protein. (2363 aa)
	A0A0D3EQB8	Uncharacterized protein. (1088 aa)
	A0A0D3HSB9	ATP-grasp domain-containing protein. (519 aa)
	A0A0D3HT17	Glutathione synthetase. (498 aa)
	A0A0D3HV77	Glutathione synthetase. (485 aa)
	A0A0D3HWJ7	Uncharacterized protein. (764 aa)

Your Current Organism:

Oryza barthii

NCBI taxonomy Id: 65489
Other names: African wild rice, O. barthii, Oryza barthii A.Chev., Oryza breviligulata, Oryza breviligulata A.Chev. & Roehr.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0D3EKQ8	A0A0D3EQB8	ATP-grasp domain-containing protein.	Uncharacterized protein.	0.459
A0A0D3EKQ8	A0A0D3G5L3	ATP-grasp domain-containing protein.	Uncharacterized protein.	0.737
A0A0D3EKQ8	A0A0D3GX44	ATP-grasp domain-containing protein.	ATP-grasp domain-containing protein.	0.988
A0A0D3EKQ8	A0A0D3HCS4	ATP-grasp domain-containing protein.	Uncharacterized protein.	0.737
A0A0D3EKQ8	A0A0D3HSB9	ATP-grasp domain-containing protein.	ATP-grasp domain-containing protein.	0.988
A0A0D3EQB8	A0A0D3EKQ8	Uncharacterized protein.	ATP-grasp domain-containing protein.	0.459
A0A0D3EQB8	A0A0D3G5L3	Uncharacterized protein.	Uncharacterized protein.	0.776
A0A0D3EQB8	A0A0D3GX44	Uncharacterized protein.	ATP-grasp domain-containing protein.	0.830
A0A0D3EQB8	A0A0D3HCS4	Uncharacterized protein.	Uncharacterized protein.	0.765
A0A0D3EQB8	A0A0D3HSB9	Uncharacterized protein.	ATP-grasp domain-containing protein.	0.830
A0A0D3EQB8	A0A0D3HWJ7	Uncharacterized protein.	Uncharacterized protein.	0.713
A0A0D3G5L3	A0A0D3EKQ8	Uncharacterized protein.	ATP-grasp domain-containing protein.	0.737
A0A0D3G5L3	A0A0D3EQB8	Uncharacterized protein.	Uncharacterized protein.	0.776
A0A0D3G5L3	A0A0D3GX44	Uncharacterized protein.	ATP-grasp domain-containing protein.	0.763
A0A0D3G5L3	A0A0D3HCS4	Uncharacterized protein.	Uncharacterized protein.	0.935
A0A0D3G5L3	A0A0D3HSB9	Uncharacterized protein.	ATP-grasp domain-containing protein.	0.763
A0A0D3G5L3	A0A0D3HWJ7	Uncharacterized protein.	Uncharacterized protein.	0.936
A0A0D3GX44	A0A0D3EKQ8	ATP-grasp domain-containing protein.	ATP-grasp domain-containing protein.	0.988
A0A0D3GX44	A0A0D3EQB8	ATP-grasp domain-containing protein.	Uncharacterized protein.	0.830
A0A0D3GX44	A0A0D3G5L3	ATP-grasp domain-containing protein.	Uncharacterized protein.	0.763