8 items (Oryza barthii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0D3H5Y5	Uncharacterized protein. (274 aa)
	A0A0D3GA77	Uncharacterized protein. (275 aa)
	A0A0D3EMB8	Uncharacterized protein. (345 aa)
	A0A0D3EQN7	Uncharacterized protein. (275 aa)
	A0A0D3ETB4	Uncharacterized protein. (309 aa)
	A0A0D3FDJ7	Uncharacterized protein. (1198 aa)
	A0A0D3FF43	Uncharacterized protein. (277 aa)
	A0A0D3FHX5	Uncharacterized protein. (337 aa)

Your Current Organism:

Oryza barthii

NCBI taxonomy Id: 65489
Other names: African wild rice, O. barthii, Oryza barthii A.Chev., Oryza breviligulata, Oryza breviligulata A.Chev. & Roehr.

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0D3EMB8	A0A0D3EQN7	Uncharacterized protein.	Uncharacterized protein.	0.781
A0A0D3EMB8	A0A0D3ETB4	Uncharacterized protein.	Uncharacterized protein.	0.781
A0A0D3EMB8	A0A0D3FF43	Uncharacterized protein.	Uncharacterized protein.	0.801
A0A0D3EMB8	A0A0D3GA77	Uncharacterized protein.	Uncharacterized protein.	0.781
A0A0D3EMB8	A0A0D3H5Y5	Uncharacterized protein.	Uncharacterized protein.	0.781
A0A0D3EQN7	A0A0D3EMB8	Uncharacterized protein.	Uncharacterized protein.	0.781
A0A0D3EQN7	A0A0D3FHX5	Uncharacterized protein.	Uncharacterized protein.	0.781
A0A0D3ETB4	A0A0D3EMB8	Uncharacterized protein.	Uncharacterized protein.	0.781
A0A0D3ETB4	A0A0D3FHX5	Uncharacterized protein.	Uncharacterized protein.	0.781
A0A0D3FF43	A0A0D3EMB8	Uncharacterized protein.	Uncharacterized protein.	0.801
A0A0D3FF43	A0A0D3FHX5	Uncharacterized protein.	Uncharacterized protein.	0.801
A0A0D3FHX5	A0A0D3EQN7	Uncharacterized protein.	Uncharacterized protein.	0.781
A0A0D3FHX5	A0A0D3ETB4	Uncharacterized protein.	Uncharacterized protein.	0.781
A0A0D3FHX5	A0A0D3FF43	Uncharacterized protein.	Uncharacterized protein.	0.801
A0A0D3FHX5	A0A0D3GA77	Uncharacterized protein.	Uncharacterized protein.	0.781
A0A0D3FHX5	A0A0D3H5Y5	Uncharacterized protein.	Uncharacterized protein.	0.781
A0A0D3GA77	A0A0D3EMB8	Uncharacterized protein.	Uncharacterized protein.	0.781
A0A0D3GA77	A0A0D3FHX5	Uncharacterized protein.	Uncharacterized protein.	0.781
A0A0D3H5Y5	A0A0D3EMB8	Uncharacterized protein.	Uncharacterized protein.	0.781
A0A0D3H5Y5	A0A0D3FHX5	Uncharacterized protein.	Uncharacterized protein.	0.781