15 items (Oryza barthii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0D3GFM5	Uncharacterized protein. (473 aa)
	A0A0D3GPX6	Uncharacterized protein. (425 aa)
	A0A0D3H444	Uncharacterized protein. (587 aa)
	A0A0D3HDJ6	Serine/threonine-protein phosphatase. (262 aa)
	A0A0D3HEP8	Uncharacterized protein. (578 aa)
	A0A0D3HSW8	DNA polymerase alpha subunit B; Accessory subunit of the DNA polymerase alpha complex (also known as the alpha DNA polymerase-primase complex) which plays an essential role in the initiation of DNA synthesis. (576 aa)
	A0A0D3F1V6	Uncharacterized protein. (466 aa)
	A0A0D3F2H3	Serine/threonine-protein phosphatase. (307 aa)
	A0A0D3FE99	Serine/threonine-protein phosphatase. (314 aa)
	A0A0D3FQE0	Serine/threonine-protein phosphatase. (363 aa)
	A0A0D3EPI6	LisH domain-containing protein. (1169 aa)
	A0A0D3EWR4	DNA polymerase. (1363 aa)
	A0A0D3G397	Uncharacterized protein. (412 aa)
	A0A0D3G6K0	DNA primase; Belongs to the eukaryotic-type primase small subunit family. (460 aa)
	A0A0D3GI30	Serine/threonine-protein phosphatase. (227 aa)

Your Current Organism:

Oryza barthii

NCBI taxonomy Id: 65489
Other names: African wild rice, O. barthii, Oryza barthii A.Chev., Oryza breviligulata, Oryza breviligulata A.Chev. & Roehr.

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0D3EPI6	A0A0D3F1V6	LisH domain-containing protein.	Uncharacterized protein.	0.880
A0A0D3EPI6	A0A0D3F2H3	LisH domain-containing protein.	Serine/threonine-protein phosphatase.	0.928
A0A0D3EPI6	A0A0D3FE99	LisH domain-containing protein.	Serine/threonine-protein phosphatase.	0.928
A0A0D3EPI6	A0A0D3FQE0	LisH domain-containing protein.	Serine/threonine-protein phosphatase.	0.928
A0A0D3EPI6	A0A0D3G397	LisH domain-containing protein.	Uncharacterized protein.	0.880
A0A0D3EPI6	A0A0D3GI30	LisH domain-containing protein.	Serine/threonine-protein phosphatase.	0.928
A0A0D3EPI6	A0A0D3HDJ6	LisH domain-containing protein.	Serine/threonine-protein phosphatase.	0.928
A0A0D3EPI6	A0A0D3HEP8	LisH domain-containing protein.	Uncharacterized protein.	0.880
A0A0D3EWR4	A0A0D3G6K0	DNA polymerase.	DNA primase; Belongs to the eukaryotic-type primase small subunit family.	0.999
A0A0D3EWR4	A0A0D3GPX6	DNA polymerase.	Uncharacterized protein.	0.999
A0A0D3EWR4	A0A0D3HSW8	DNA polymerase.	DNA polymerase alpha subunit B; Accessory subunit of the DNA polymerase alpha complex (also known as the alpha DNA polymerase-primase complex) which plays an essential role in the initiation of DNA synthesis.	0.999
A0A0D3F1V6	A0A0D3EPI6	Uncharacterized protein.	LisH domain-containing protein.	0.880
A0A0D3F1V6	A0A0D3F2H3	Uncharacterized protein.	Serine/threonine-protein phosphatase.	0.888
A0A0D3F1V6	A0A0D3FE99	Uncharacterized protein.	Serine/threonine-protein phosphatase.	0.888
A0A0D3F1V6	A0A0D3FQE0	Uncharacterized protein.	Serine/threonine-protein phosphatase.	0.835
A0A0D3F1V6	A0A0D3G397	Uncharacterized protein.	Uncharacterized protein.	0.868
A0A0D3F1V6	A0A0D3GFM5	Uncharacterized protein.	Uncharacterized protein.	0.880
A0A0D3F1V6	A0A0D3GI30	Uncharacterized protein.	Serine/threonine-protein phosphatase.	0.888
A0A0D3F1V6	A0A0D3H444	Uncharacterized protein.	Uncharacterized protein.	0.949
A0A0D3F1V6	A0A0D3HDJ6	Uncharacterized protein.	Serine/threonine-protein phosphatase.	0.888