90 items (Oryza barthii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0D3GRJ5	Uncharacterized protein. (338 aa)
	A0A0D3GR71	Uncharacterized protein. (699 aa)
	A0A0D3GN43	HAUS-augmin3 domain-containing protein. (602 aa)
	A0A0D3GKT7	Uncharacterized protein. (94 aa)
	A0A0D3GKG2	Uncharacterized protein. (420 aa)
	A0A0D3GJS9	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. (446 aa)
	A0A0D3GJK2	Uncharacterized protein. (359 aa)
	A0A0D3GJ91	Uncharacterized protein. (225 aa)
	A0A0D3GHA1	Uncharacterized protein. (240 aa)
	A0A0D3GFW1	Uncharacterized protein. (304 aa)
	A0A0D3GDM3	HAUS-augmin3 domain-containing protein. (617 aa)
	A0A0D3GBA0	Uncharacterized protein. (925 aa)
	A0A0D3GAX4	Uncharacterized protein. (801 aa)
	A0A0D3G9M1	Uncharacterized protein. (181 aa)
	A0A0D3G7M0	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. (444 aa)
	A0A0D3G6M8	Uncharacterized protein. (184 aa)
	A0A0D3G6M7	Uncharacterized protein. (173 aa)
	A0A0D3G6A8	Uncharacterized protein. (329 aa)
	A0A0D3FZX8	Uncharacterized protein. (382 aa)
	A0A0D3FYJ4	Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. (411 aa)
	A0A0D3FW80	Uncharacterized protein. (160 aa)
	A0A0D3FVU3	Exocyst complex component SEC5; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane. Belongs to the SEC5 family. (1105 aa)
	A0A0D3FUN2	Uncharacterized protein. (235 aa)
	A0A0D3FS08	SEC7 domain-containing protein. (1399 aa)
	A0A0D3ES59	Uncharacterized protein. (817 aa)
	A0A0D3ET17	Uncharacterized protein. (194 aa)
	A0A0D3EV77	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. (447 aa)
	A0A0D3EVF8	Uncharacterized protein. (1915 aa)
	A0A0D3EVF9	TOG domain-containing protein. (436 aa)
	A0A0D3EZW1	Uncharacterized protein. (428 aa)
	A0A0D3F0D0	Uncharacterized protein. (104 aa)
	A0A0D3F162	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. Belongs to the tubulin family. (382 aa)
	A0A0D3F1E8	Uncharacterized protein. (390 aa)
	A0A0D3F220	Uncharacterized protein. (1083 aa)
	A0A0D3F4H9	SEC7 domain-containing protein. (1383 aa)
	A0A0D3F567	Uncharacterized protein. (150 aa)
	A0A0D3GRK0	Uncharacterized protein. (296 aa)
	A0A0D3F6E7	C-CAP/cofactor C-like domain-containing protein. (255 aa)
	A0A0D3F6M0	Uncharacterized protein. (142 aa)
	A0A0D3F6N0	ATP-synt_ab domain-containing protein. (93 aa)
	A0A0D3F898	Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. (411 aa)
	A0A0D3FAI6	Uncharacterized protein. (209 aa)
	A0A0D3FAS0	Uncharacterized protein. (1195 aa)
	A0A0D3FBJ5	CYTOSOL_AP domain-containing protein. (532 aa)
	A0A0D3FBM3	Uncharacterized protein. (218 aa)
	A0A0D3FCN9	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. (447 aa)
	A0A0D3FE63	Exocyst complex component; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane. (788 aa)
	A0A0D3FFJ4	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. Belongs to the tubulin family. (449 aa)
	A0A0D3FJE7	Uncharacterized protein. (138 aa)
	A0A0D3FJE8	Uncharacterized protein. (132 aa)
	A0A0D3FL95	Uncharacterized protein. (189 aa)
	A0A0D3FLD9	Uncharacterized protein. (289 aa)
	A0A0D3FLF6	Sec3-PIP2_bind domain-containing protein. (860 aa)
	A0A0D3FM22	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. (446 aa)
	A0A0D3FM54	SEC7 domain-containing protein. (1250 aa)
	A0A0D3FMN6	ATP-synt_ab_N domain-containing protein. (243 aa)
	A0A0D3FN03	Uncharacterized protein. (337 aa)
	A0A0D3FNH6	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. (451 aa)
	A0A0D3FNS2	Uncharacterized protein. (214 aa)
	A0A0D3H4E2	WD_REPEATS_REGION domain-containing protein. (990 aa)
	A0A0D3H4A0	Uncharacterized protein; Belongs to the SWEET sugar transporter family. (635 aa)
	A0A0D3H1D5	ATP synthase subunit d, mitochondrial; Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the cent [...] (169 aa)
	A0A0D3H0D8	Uncharacterized protein. (84 aa)
	A0A0D3GYV7	Sec8_exocyst domain-containing protein. (995 aa)
	A0A0D3GXZ8	Uncharacterized protein. (69 aa)
	A0A0D3GXT9	Uncharacterized protein. (117 aa)
	A0A0D3GXL0	Uncharacterized protein. (407 aa)
	A0A0D3GSP5	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. Belongs to the tubulin family. (450 aa)
	A0A0D3GRN1	Uncharacterized protein. (468 aa)
	A0A0D3GRM6	Uncharacterized protein. (348 aa)
	A0A0D3GRM2	Uncharacterized protein. (358 aa)
	A0A0D3FR69	Uncharacterized protein. (126 aa)
	A0A0D3GRM0	Uncharacterized protein. (308 aa)
	A0A0D3H6V0	Uncharacterized protein. (308 aa)
	A0A0D3HC74	Uncharacterized protein. (577 aa)
	A0A0D3HDN2	Exocyst complex component; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane. (732 aa)
	A0A0D3HDU1	Uncharacterized protein. (782 aa)
	A0A0D3HFG6	J domain-containing protein. (540 aa)
	A0A0D3HK00	Uncharacterized protein. (456 aa)
	A0A0D3HK41	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. (451 aa)
	A0A0D3HKJ5	Sec3-PIP2_bind domain-containing protein. (850 aa)
	A0A0D3HLD3	Uncharacterized protein. (208 aa)
	A0A0D3HSD0	Uncharacterized protein. (121 aa)
	A0A0D3HU00	CYTOSOL_AP domain-containing protein. (498 aa)
	A0A0D3FPS2	Inosine-5'-monophosphate dehydrogenase; Belongs to the tubulin family. (964 aa)
	A0A0D3FQ37	Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. (443 aa)
	A0A0D3EMI0	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. (447 aa)
	A0A0D3ENJ6	Uncharacterized protein. (614 aa)
	A0A0D3EQ52	ELFV_dehydrog domain-containing protein; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. (606 aa)
	A0A0D3ERR1	Uncharacterized protein. (226 aa)

Your Current Organism:

Oryza barthii

NCBI taxonomy Id: 65489
Other names: African wild rice, O. barthii, Oryza barthii A.Chev., Oryza breviligulata, Oryza breviligulata A.Chev. & Roehr.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0D3EMI0	A0A0D3EVF8	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	Uncharacterized protein.	0.647
A0A0D3EMI0	A0A0D3EVF9	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	TOG domain-containing protein.	0.647
A0A0D3EMI0	A0A0D3F1E8	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	Uncharacterized protein.	0.846
A0A0D3EMI0	A0A0D3F220	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	Uncharacterized protein.	0.647
A0A0D3EMI0	A0A0D3F567	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	Uncharacterized protein.	0.846
A0A0D3EMI0	A0A0D3FAS0	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	Uncharacterized protein.	0.647
A0A0D3EMI0	A0A0D3FFJ4	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. Belongs to the tubulin family.	0.960
A0A0D3EMI0	A0A0D3FNH6	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.968
A0A0D3EMI0	A0A0D3FZX8	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	Uncharacterized protein.	0.846
A0A0D3EMI0	A0A0D3GJK2	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	Uncharacterized protein.	0.846
A0A0D3EMI0	A0A0D3GKG2	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	Uncharacterized protein.	0.846
A0A0D3EMI0	A0A0D3GSP5	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. Belongs to the tubulin family.	0.948
A0A0D3EMI0	A0A0D3GXL0	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	Uncharacterized protein.	0.846
A0A0D3EMI0	A0A0D3GXT9	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	Uncharacterized protein.	0.468
A0A0D3EMI0	A0A0D3HK41	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.957
A0A0D3ENJ6	A0A0D3FBM3	Uncharacterized protein.	Uncharacterized protein.	0.507
A0A0D3ENJ6	A0A0D3FLF6	Uncharacterized protein.	Sec3-PIP2_bind domain-containing protein.	0.892
A0A0D3ENJ6	A0A0D3FVU3	Uncharacterized protein.	Exocyst complex component SEC5; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane. Belongs to the SEC5 family.	0.935
A0A0D3ENJ6	A0A0D3GFW1	Uncharacterized protein.	Uncharacterized protein.	0.507
A0A0D3ENJ6	A0A0D3GYV7	Uncharacterized protein.	Sec8_exocyst domain-containing protein.	0.945