41 items (Oryza barthii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0D3EJG8	Uncharacterized protein. (80 aa)
	A0A0D3EJG9	Uncharacterized protein. (168 aa)
	A0A0D3EN93	Ubiquitin-like domain-containing protein. (155 aa)
	A0A0D3ETN4	DNA_pol3_gamma3 domain-containing protein. (873 aa)
	A0A0D3EW63	Uncharacterized protein. (581 aa)
	A0A0D3F7S2	NAC domain-containing protein. (247 aa)
	A0A0D3F9F8	Uncharacterized protein. (721 aa)
	A0A0D3FB38	AAA domain-containing protein. (361 aa)
	A0A0D3FB52	Replication protein A subunit; Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Probably involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses. (656 aa)
	A0A0D3FBS7	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (263 aa)
	A0A0D3FBW9	NAC domain-containing protein. (335 aa)
	A0A0D3FCS9	NAC domain-containing protein. (296 aa)
	A0A0D3FFF4	Replication protein A subunit; Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Probably involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses. (630 aa)
	A0A0D3FGH9	AAA domain-containing protein. (1233 aa)
	A0A0D3FK54	Uncharacterized protein. (665 aa)
	A0A0D3FLA3	UmuC domain-containing protein. (662 aa)
	A0A0D3FQ18	Uncharacterized protein. (303 aa)
	A0A0D3FRJ6	DUF223 domain-containing protein. (482 aa)
	A0A0D3FXY4	NAC domain-containing protein. (278 aa)
	A0A0D3FZ31	AAA domain-containing protein. (335 aa)
	A0A0D3G0H2	DUF223 domain-containing protein. (218 aa)
	A0A0D3G2G2	Uncharacterized protein. (207 aa)
	A0A0D3G923	Uncharacterized protein. (216 aa)
	A0A0D3G924	Uncharacterized protein. (541 aa)
	A0A0D3GA22	DNA_pol3_gamma3 domain-containing protein. (716 aa)
	A0A0D3GBR2	NAC domain-containing protein. (683 aa)
	A0A0D3GK68	DNA repair protein REV1; Deoxycytidyl transferase involved in DNA repair. Transfers a dCMP residue from dCTP to the 3'-end of a DNA primer in a template- dependent reaction. May assist in the first step in the bypass of abasic lesions by the insertion of a nucleotide opposite the lesion. Required for normal induction of mutations by physical and chemical agents; Belongs to the DNA polymerase type-Y family. (1100 aa)
	A0A0D3GU33	Uncharacterized protein. (571 aa)
	A0A0D3GUR8	Uncharacterized protein. (1755 aa)
	A0A0D3GVU8	AAA domain-containing protein. (795 aa)
	A0A0D3GWI6	NAC domain-containing protein. (676 aa)
	A0A0D3HDM4	NAC domain-containing protein. (290 aa)
	A0A0D3HEQ6	NAC domain-containing protein. (324 aa)
	A0A0D3HGW4	Uncharacterized protein. (594 aa)
	A0A0D3HK17	DNA_pol3_gamma3 domain-containing protein. (1183 aa)
	A0A0D3HN71	Replication factor C subunit 1. (979 aa)
	A0A0D3HPS1	Uncharacterized protein. (829 aa)
	A0A0D3HS00	AAA domain-containing protein. (339 aa)
	A0A0D3HSH9	DNA_pol3_gamma3 domain-containing protein. (1174 aa)
	A0A0D3HTF8	AAA domain-containing protein. (971 aa)
	A0A0D3HUX0	Uncharacterized protein. (312 aa)

Your Current Organism:

Oryza barthii

NCBI taxonomy Id: 65489
Other names: African wild rice, O. barthii, Oryza barthii A.Chev., Oryza breviligulata, Oryza breviligulata A.Chev. & Roehr.

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0D3EJG8	A0A0D3EN93	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.534
A0A0D3EJG8	A0A0D3ETN4	Uncharacterized protein.	DNA_pol3_gamma3 domain-containing protein.	0.523
A0A0D3EJG8	A0A0D3F9F8	Uncharacterized protein.	Uncharacterized protein.	0.618
A0A0D3EJG8	A0A0D3FB38	Uncharacterized protein.	AAA domain-containing protein.	0.690
A0A0D3EJG8	A0A0D3FBS7	Uncharacterized protein.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.840
A0A0D3EJG8	A0A0D3FGH9	Uncharacterized protein.	AAA domain-containing protein.	0.702
A0A0D3EJG8	A0A0D3FK54	Uncharacterized protein.	Uncharacterized protein.	0.501
A0A0D3EJG8	A0A0D3FLA3	Uncharacterized protein.	UmuC domain-containing protein.	0.501
A0A0D3EJG8	A0A0D3FQ18	Uncharacterized protein.	Uncharacterized protein.	0.618
A0A0D3EJG8	A0A0D3FZ31	Uncharacterized protein.	AAA domain-containing protein.	0.710
A0A0D3EJG8	A0A0D3GA22	Uncharacterized protein.	DNA_pol3_gamma3 domain-containing protein.	0.523
A0A0D3EJG8	A0A0D3GK68	Uncharacterized protein.	DNA repair protein REV1; Deoxycytidyl transferase involved in DNA repair. Transfers a dCMP residue from dCTP to the 3'-end of a DNA primer in a template- dependent reaction. May assist in the first step in the bypass of abasic lesions by the insertion of a nucleotide opposite the lesion. Required for normal induction of mutations by physical and chemical agents; Belongs to the DNA polymerase type-Y family.	0.553
A0A0D3EJG8	A0A0D3GUR8	Uncharacterized protein.	Uncharacterized protein.	0.694
A0A0D3EJG8	A0A0D3GVU8	Uncharacterized protein.	AAA domain-containing protein.	0.523
A0A0D3EJG8	A0A0D3HGW4	Uncharacterized protein.	Uncharacterized protein.	0.618
A0A0D3EJG8	A0A0D3HK17	Uncharacterized protein.	DNA_pol3_gamma3 domain-containing protein.	0.523
A0A0D3EJG8	A0A0D3HN71	Uncharacterized protein.	Replication factor C subunit 1.	0.702
A0A0D3EJG8	A0A0D3HS00	Uncharacterized protein.	AAA domain-containing protein.	0.523
A0A0D3EJG8	A0A0D3HSH9	Uncharacterized protein.	DNA_pol3_gamma3 domain-containing protein.	0.523
A0A0D3EJG8	A0A0D3HTF8	Uncharacterized protein.	AAA domain-containing protein.	0.523