27 items (Oryza barthii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0D3F3Q5	Tr-type G domain-containing protein. (711 aa)
	A0A0D3HR85	Uncharacterized protein. (258 aa)
	A0A0D3HLG7	Uncharacterized protein. (368 aa)
	A0A0D3HE46	Uncharacterized protein. (817 aa)
	A0A0D3H2N1	Ubiquitin thioesterase. (270 aa)
	A0A0D3H076	Uncharacterized protein. (847 aa)
	A0A0D3GXV6	RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of plastid-encoded RNA polymerase (PEP) to specific initiation sites and are then released. (434 aa)
	A0A0D3GVH8	RING-type domain-containing protein. (293 aa)
	A0A0D3GCR3	Translation factor GUF1 homolog, mitochondrial; Promotes mitochondrial protein synthesis. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Binds to mitochondrial ribosomes in a GTP-dependent manner. (768 aa)
	A0A0D3GBE7	Uncharacterized protein. (500 aa)
	A0A0D3G6Y7	AAA domain-containing protein; Belongs to the AAA ATPase family. (392 aa)
	A0A0D3G115	Uncharacterized protein. (498 aa)
	A0A0D3FXI7	Uncharacterized protein; Belongs to the AAA ATPase family. (535 aa)
	A0A0D3FGR9	RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of plastid-encoded RNA polymerase (PEP) to specific initiation sites and are then released. (488 aa)
	A0A0D3FE96	RING-type domain-containing protein. (524 aa)
	A0A0D3FDX3	Uncharacterized protein. (809 aa)
	A0A0D3FAA7	AAA domain-containing protein. (1025 aa)
	A0A0D3F5S5	Uncharacterized protein. (800 aa)
	A0A0D3F5R8	Uncharacterized protein. (402 aa)
	A0A0D3F5R7	Uncharacterized protein. (493 aa)
	A0A0D3F5P2	Uncharacterized protein. (591 aa)
	A0A0D3F5L5	OTU domain-containing protein. (734 aa)
	A0A0D3F3D4	ANK_REP_REGION domain-containing protein. (485 aa)
	A0A0D3F139	OTU domain-containing protein. (208 aa)
	A0A0D3F0Y1	Translation factor GUF1 homolog, mitochondrial; Promotes mitochondrial protein synthesis. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Binds to mitochondrial ribosomes in a GTP-dependent manner. (596 aa)
	A0A0D3EU27	Tr-type G domain-containing protein. (656 aa)
	A0A0D3EN93	Ubiquitin-like domain-containing protein. (155 aa)

Your Current Organism:

Oryza barthii

NCBI taxonomy Id: 65489
Other names: African wild rice, O. barthii, Oryza barthii A.Chev., Oryza breviligulata, Oryza breviligulata A.Chev. & Roehr.

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0D3EN93	A0A0D3EU27	Ubiquitin-like domain-containing protein.	Tr-type G domain-containing protein.	0.636
A0A0D3EN93	A0A0D3F0Y1	Ubiquitin-like domain-containing protein.	Translation factor GUF1 homolog, mitochondrial; Promotes mitochondrial protein synthesis. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Binds to mitochondrial ribosomes in a GTP-dependent manner.	0.668
A0A0D3EN93	A0A0D3F139	Ubiquitin-like domain-containing protein.	OTU domain-containing protein.	0.953
A0A0D3EN93	A0A0D3F3D4	Ubiquitin-like domain-containing protein.	ANK_REP_REGION domain-containing protein.	0.865
A0A0D3EN93	A0A0D3F3Q5	Ubiquitin-like domain-containing protein.	Tr-type G domain-containing protein.	0.636
A0A0D3EN93	A0A0D3F5L5	Ubiquitin-like domain-containing protein.	OTU domain-containing protein.	0.790
A0A0D3EN93	A0A0D3F5P2	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.790
A0A0D3EN93	A0A0D3F5R7	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.790
A0A0D3EN93	A0A0D3F5R8	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.790
A0A0D3EN93	A0A0D3F5S5	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.790
A0A0D3EN93	A0A0D3FAA7	Ubiquitin-like domain-containing protein.	AAA domain-containing protein.	0.865
A0A0D3EN93	A0A0D3FDX3	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.865
A0A0D3EN93	A0A0D3FE96	Ubiquitin-like domain-containing protein.	RING-type domain-containing protein.	0.633
A0A0D3EN93	A0A0D3FGR9	Ubiquitin-like domain-containing protein.	RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of plastid-encoded RNA polymerase (PEP) to specific initiation sites and are then released.	0.636
A0A0D3EN93	A0A0D3FXI7	Ubiquitin-like domain-containing protein.	Uncharacterized protein; Belongs to the AAA ATPase family.	0.865
A0A0D3EN93	A0A0D3G115	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.790
A0A0D3EN93	A0A0D3G6Y7	Ubiquitin-like domain-containing protein.	AAA domain-containing protein; Belongs to the AAA ATPase family.	0.865
A0A0D3EN93	A0A0D3GBE7	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.636
A0A0D3EN93	A0A0D3GCR3	Ubiquitin-like domain-containing protein.	Translation factor GUF1 homolog, mitochondrial; Promotes mitochondrial protein synthesis. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Binds to mitochondrial ribosomes in a GTP-dependent manner.	0.668
A0A0D3EN93	A0A0D3GVH8	Ubiquitin-like domain-containing protein.	RING-type domain-containing protein.	0.633