128 items (Oryza barthii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0D3HR42	Uncharacterized protein. (778 aa)
	A0A0D3HR75	Uncharacterized protein. (195 aa)
	A0A0D3HR98	Uncharacterized protein. (292 aa)
	A0A0D3HR99	Uncharacterized protein. (102 aa)
	A0A0D3ENQ4	Uncharacterized protein. (911 aa)
	A0A0D3HRQ5	Uncharacterized protein. (236 aa)
	A0A0D3HRW6	Uncharacterized protein. (426 aa)
	A0A0D3HSP0	Uncharacterized protein. (173 aa)
	A0A0D3HSP4	Uncharacterized protein. (402 aa)
	A0A0D3HU35	Uncharacterized protein. (228 aa)
	A0A0D3HUK8	Uncharacterized protein. (411 aa)
	A0A0D3HWE1	Uncharacterized protein. (225 aa)
	A0A0D3HWI5	Uncharacterized protein. (166 aa)
	A0A0D3HNG7	Uncharacterized protein. (142 aa)
	A0A0D3HR29	Uncharacterized protein. (632 aa)
	A0A0D3F0Y5	Uncharacterized protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (611 aa)
	A0A0D3F045	Uncharacterized protein. (543 aa)
	A0A0D3EYX3	Phosphatidylserine decarboxylase proenzyme 2. (683 aa)
	A0A0D3EYT3	Uncharacterized protein. (146 aa)
	A0A0D3EYT2	Uncharacterized protein. (151 aa)
	A0A0D3EYT1	Uncharacterized protein. (151 aa)
	A0A0D3EYN8	Uncharacterized protein. (189 aa)
	A0A0D3EVV4	Uncharacterized protein. (457 aa)
	A0A0D3EV94	Uncharacterized protein; Belongs to the calmodulin family. (187 aa)
	A0A0D3EV86	Uncharacterized protein. (343 aa)
	A0A0D3ET68	Uncharacterized protein. (266 aa)
	A0A0D3ESH0	Uncharacterized protein. (655 aa)
	A0A0D3ERD3	Uncharacterized protein. (401 aa)
	A0A0D3EQV0	Uncharacterized protein. (301 aa)
	A0A0D3EQD3	Uncharacterized protein. (396 aa)
	A0A0D3EPC4	Uncharacterized protein. (275 aa)
	A0A0D3HNQ1	Uncharacterized protein. (191 aa)
	A0A0D3HIR3	Uncharacterized protein. (513 aa)
	A0A0D3HI34	Uncharacterized protein. (146 aa)
	A0A0D3HI18	Uncharacterized protein. (194 aa)
	A0A0D3HI09	Uncharacterized protein. (292 aa)
	A0A0D3HHW6	Uncharacterized protein. (924 aa)
	A0A0D3HHV5	Uncharacterized protein. (183 aa)
	A0A0D3HH65	Uncharacterized protein. (150 aa)
	A0A0D3HH58	Uncharacterized protein. (149 aa)
	A0A0D3HGQ0	Uncharacterized protein. (109 aa)
	A0A0D3HG36	Uncharacterized protein. (608 aa)
	A0A0D3HD65	Uncharacterized protein. (198 aa)
	A0A0D3HBQ3	Uncharacterized protein. (387 aa)
	A0A0D3H8V5	Uncharacterized protein. (654 aa)
	A0A0D3H886	Uncharacterized protein. (137 aa)
	A0A0D3H883	Uncharacterized protein. (140 aa)
	A0A0D3H882	Uncharacterized protein. (138 aa)
	A0A0D3H878	Uncharacterized protein. (137 aa)
	A0A0D3H876	Uncharacterized protein. (138 aa)
	A0A0D3H7Q5	Uncharacterized protein. (105 aa)
	A0A0D3H7Q4	Uncharacterized protein. (185 aa)
	A0A0D3H6T6	Uncharacterized protein. (173 aa)
	A0A0D3H380	Uncharacterized protein. (82 aa)
	A0A0D3H358	Uncharacterized protein. (304 aa)
	A0A0D3H2Q4	Uncharacterized protein. (521 aa)
	A0A0D3H1V0	Uncharacterized protein. (135 aa)
	A0A0D3GVT2	Uncharacterized protein. (148 aa)
	A0A0D3GV66	Uncharacterized protein. (415 aa)
	A0A0D3GTM5	Uncharacterized protein. (155 aa)
	A0A0D3GTM1	Uncharacterized protein. (91 aa)
	A0A0D3GTL9	Uncharacterized protein. (169 aa)
	A0A0D3GSJ8	Uncharacterized protein. (550 aa)
	A0A0D3GRL6	Uncharacterized protein. (533 aa)
	A0A0D3GPZ7	Uncharacterized protein. (540 aa)
	A0A0D3GNS0	Uncharacterized protein. (150 aa)
	A0A0D3GMK1	Uncharacterized protein. (585 aa)
	A0A0D3GL30	Uncharacterized protein. (1188 aa)
	A0A0D3GK73	Uncharacterized protein. (170 aa)
	A0A0D3GK55	Uncharacterized protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (496 aa)
	A0A0D3GIK5	Uncharacterized protein. (224 aa)
	A0A0D3GIG9	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (588 aa)
	A0A0D3GDD0	Uncharacterized protein. (195 aa)
	A0A0D3GBD2	Uncharacterized protein. (541 aa)
	A0A0D3GB68	Uncharacterized protein. (170 aa)
	A0A0D3GA59	Uncharacterized protein. (204 aa)
	A0A0D3G9A2	Uncharacterized protein. (420 aa)
	A0A0D3G996	Uncharacterized protein; Belongs to the calmodulin family. (149 aa)
	A0A0D3G995	Uncharacterized protein. (155 aa)
	A0A0D3G979	Uncharacterized protein. (516 aa)
	A0A0D3G8S0	Uncharacterized protein. (551 aa)
	A0A0D3G8Q9	Uncharacterized protein. (828 aa)
	A0A0D3G709	Uncharacterized protein. (201 aa)
	A0A0D3G5W7	Uncharacterized protein. (67 aa)
	A0A0D3G4N4	Uncharacterized protein. (110 aa)
	A0A0D3G397	Uncharacterized protein. (412 aa)
	A0A0D3G364	Uncharacterized protein. (249 aa)
	A0A0D3G1U6	Uncharacterized protein. (383 aa)
	A0A0D3G1G1	Uncharacterized protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (602 aa)
	A0A0D3FZF4	Uncharacterized protein. (528 aa)
	A0A0D3EME9	Uncharacterized protein; Belongs to the calmodulin family. (166 aa)
	A0A0D3EM58	Uncharacterized protein; Belongs to the calmodulin family. (149 aa)
	A0A0D3EL17	Uncharacterized protein; Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family. (584 aa)
	A0A0D3EJB4	Uncharacterized protein. (181 aa)
	A0A0D3FYW3	Uncharacterized protein. (490 aa)
	A0A0D3FXM3	Uncharacterized protein. (329 aa)
	A0A0D3FXH1	Uncharacterized protein. (753 aa)
	A0A0D3FXE5	Uncharacterized protein. (251 aa)
	A0A0D3FQK3	Uncharacterized protein. (170 aa)
	A0A0D3FQJ9	Uncharacterized protein. (148 aa)
	A0A0D3FQJ8	Uncharacterized protein. (410 aa)
	A0A0D3FQI3	Mitochondrial Rho GTPase. (642 aa)
	A0A0D3FQG8	Uncharacterized protein. (538 aa)
	A0A0D3FPZ7	Uncharacterized protein. (578 aa)
	A0A0D3FPZ4	Uncharacterized protein. (599 aa)
	A0A0D3FPJ4	Uncharacterized protein. (185 aa)
	A0A0D3FNX5	Uncharacterized protein; Belongs to the histone H2A family. (331 aa)
	A0A0D3FN95	Uncharacterized protein. (276 aa)
	A0A0D3FMM0	Uncharacterized protein. (554 aa)
	A0A0D3FJQ9	Uncharacterized protein. (158 aa)
	A0A0D3FJG0	Uncharacterized protein. (157 aa)
	A0A0D3FI33	Uncharacterized protein. (190 aa)
	A0A0D3FHN9	Uncharacterized protein. (173 aa)
	A0A0D3FDD5	Uncharacterized protein. (1068 aa)
	A0A0D3FDB8	Uncharacterized protein. (552 aa)
	A0A0D3FCG6	Uncharacterized protein. (545 aa)
	A0A0D3FAU8	Uncharacterized protein. (100 aa)
	A0A0D3FA58	Uncharacterized protein. (348 aa)
	A0A0D3FA54	Uncharacterized protein. (209 aa)
	A0A0D3FA51	Uncharacterized protein. (76 aa)
	A0A0D3F918	Uncharacterized protein. (406 aa)
	A0A0D3F7J8	Uncharacterized protein. (473 aa)
	A0A0D3F7D7	Uncharacterized protein. (162 aa)
	A0A0D3F565	Uncharacterized protein. (141 aa)
	A0A0D3F327	Uncharacterized protein; Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family. (575 aa)
	A0A0D3F2L0	Uncharacterized protein. (290 aa)
	A0A0D3F245	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (457 aa)
	A0A0D3F214	Uncharacterized protein. (323 aa)

Your Current Organism:

Oryza barthii

NCBI taxonomy Id: 65489
Other names: African wild rice, O. barthii, Oryza barthii A.Chev., Oryza breviligulata, Oryza breviligulata A.Chev. & Roehr.

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0D3EJB4	A0A0D3ERD3	Uncharacterized protein.	Uncharacterized protein.	0.420
A0A0D3EJB4	A0A0D3ESH0	Uncharacterized protein.	Uncharacterized protein.	0.718
A0A0D3EJB4	A0A0D3EV86	Uncharacterized protein.	Uncharacterized protein.	0.420
A0A0D3EJB4	A0A0D3EVV4	Uncharacterized protein.	Uncharacterized protein.	0.420
A0A0D3EJB4	A0A0D3F045	Uncharacterized protein.	Uncharacterized protein.	0.420
A0A0D3EJB4	A0A0D3F918	Uncharacterized protein.	Uncharacterized protein.	0.420
A0A0D3EJB4	A0A0D3FCG6	Uncharacterized protein.	Uncharacterized protein.	0.420
A0A0D3EJB4	A0A0D3FDB8	Uncharacterized protein.	Uncharacterized protein.	0.420
A0A0D3EJB4	A0A0D3FMM0	Uncharacterized protein.	Uncharacterized protein.	0.420
A0A0D3EJB4	A0A0D3FN95	Uncharacterized protein.	Uncharacterized protein.	0.442
A0A0D3EJB4	A0A0D3FPZ4	Uncharacterized protein.	Uncharacterized protein.	0.420
A0A0D3EJB4	A0A0D3FPZ7	Uncharacterized protein.	Uncharacterized protein.	0.420
A0A0D3EJB4	A0A0D3FQG8	Uncharacterized protein.	Uncharacterized protein.	0.420
A0A0D3EJB4	A0A0D3FYW3	Uncharacterized protein.	Uncharacterized protein.	0.420
A0A0D3EJB4	A0A0D3FZF4	Uncharacterized protein.	Uncharacterized protein.	0.420
A0A0D3EJB4	A0A0D3G8S0	Uncharacterized protein.	Uncharacterized protein.	0.420
A0A0D3EJB4	A0A0D3G979	Uncharacterized protein.	Uncharacterized protein.	0.420
A0A0D3EJB4	A0A0D3G9A2	Uncharacterized protein.	Uncharacterized protein.	0.420
A0A0D3EJB4	A0A0D3GBD2	Uncharacterized protein.	Uncharacterized protein.	0.420
A0A0D3EJB4	A0A0D3GMK1	Uncharacterized protein.	Uncharacterized protein.	0.420