(21 nodes) Taurine and hypotaurine metabolism network (Oryza barthii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0D3H7Y1	Uncharacterized protein. (252 aa)
	A0A0D3H525	Uncharacterized protein. (219 aa)
	A0A0D3H1E8	Uncharacterized protein. (266 aa)
	A0A0D3H165	Glutamate decarboxylase; Belongs to the group II decarboxylase family. (495 aa)
	A0A0D3GW35	Uncharacterized protein. (65 aa)
	A0A0D3GW27	Uncharacterized protein. (270 aa)
	A0A0D3GBK2	Uncharacterized protein. (274 aa)
	A0A0D3FWK8	Uncharacterized protein. (571 aa)
	A0A0D3FWE5	Glutamate decarboxylase; Belongs to the group II decarboxylase family. (829 aa)
	A0A0D3FWD9	Uncharacterized protein. (234 aa)
	A0A0D3FSC1	Uncharacterized protein. (250 aa)
	A0A0D3FNC2	Glutamate decarboxylase; Belongs to the group II decarboxylase family. (435 aa)
	A0A0D3FLY9	Uncharacterized protein. (286 aa)
	A0A0D3FLY6	Uncharacterized protein. (308 aa)
	A0A0D3FFX9	Glutamate decarboxylase; Belongs to the group II decarboxylase family. (492 aa)
	A0A0D3F4D0	Uncharacterized protein. (215 aa)
	A0A0D3EQM9	Uncharacterized protein. (582 aa)
	A0A0D3EKG3	Uncharacterized protein. (257 aa)
	A0A0D3EJN4	Uncharacterized protein. (563 aa)
	A0A0D3EJN3	Uncharacterized protein. (342 aa)
	A0A0D3HWX8	Uncharacterized protein. (272 aa)

Your Current Organism:

Oryza barthii

NCBI taxonomy Id: 65489
Other names: African wild rice, O. barthii, Oryza barthii A.Chev., Oryza breviligulata, Oryza breviligulata A.Chev. & Roehr.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0D3EJN3	A0A0D3FFX9	Uncharacterized protein.	Glutamate decarboxylase; Belongs to the group II decarboxylase family.	0.915
A0A0D3EJN3	A0A0D3FNC2	Uncharacterized protein.	Glutamate decarboxylase; Belongs to the group II decarboxylase family.	0.915
A0A0D3EJN3	A0A0D3FWD9	Uncharacterized protein.	Uncharacterized protein.	0.915
A0A0D3EJN3	A0A0D3FWE5	Uncharacterized protein.	Glutamate decarboxylase; Belongs to the group II decarboxylase family.	0.585
A0A0D3EJN3	A0A0D3FWK8	Uncharacterized protein.	Uncharacterized protein.	0.908
A0A0D3EJN3	A0A0D3H165	Uncharacterized protein.	Glutamate decarboxylase; Belongs to the group II decarboxylase family.	0.915
A0A0D3EJN4	A0A0D3FFX9	Uncharacterized protein.	Glutamate decarboxylase; Belongs to the group II decarboxylase family.	0.915
A0A0D3EJN4	A0A0D3FNC2	Uncharacterized protein.	Glutamate decarboxylase; Belongs to the group II decarboxylase family.	0.915
A0A0D3EJN4	A0A0D3FWD9	Uncharacterized protein.	Uncharacterized protein.	0.915
A0A0D3EJN4	A0A0D3FWE5	Uncharacterized protein.	Glutamate decarboxylase; Belongs to the group II decarboxylase family.	0.585
A0A0D3EJN4	A0A0D3FWK8	Uncharacterized protein.	Uncharacterized protein.	0.913
A0A0D3EJN4	A0A0D3H165	Uncharacterized protein.	Glutamate decarboxylase; Belongs to the group II decarboxylase family.	0.915
A0A0D3FFX9	A0A0D3EJN3	Glutamate decarboxylase; Belongs to the group II decarboxylase family.	Uncharacterized protein.	0.915
A0A0D3FFX9	A0A0D3EJN4	Glutamate decarboxylase; Belongs to the group II decarboxylase family.	Uncharacterized protein.	0.915
A0A0D3FFX9	A0A0D3FNC2	Glutamate decarboxylase; Belongs to the group II decarboxylase family.	Glutamate decarboxylase; Belongs to the group II decarboxylase family.	0.863
A0A0D3FFX9	A0A0D3FWD9	Glutamate decarboxylase; Belongs to the group II decarboxylase family.	Uncharacterized protein.	0.859
A0A0D3FFX9	A0A0D3FWK8	Glutamate decarboxylase; Belongs to the group II decarboxylase family.	Uncharacterized protein.	0.941
A0A0D3FFX9	A0A0D3H165	Glutamate decarboxylase; Belongs to the group II decarboxylase family.	Glutamate decarboxylase; Belongs to the group II decarboxylase family.	0.858
A0A0D3FNC2	A0A0D3EJN3	Glutamate decarboxylase; Belongs to the group II decarboxylase family.	Uncharacterized protein.	0.915
A0A0D3FNC2	A0A0D3EJN4	Glutamate decarboxylase; Belongs to the group II decarboxylase family.	Uncharacterized protein.	0.915