(89 nodes) Circadian rhythm - plant network (Oryza barthii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0D3GRT1	Uncharacterized protein; Belongs to the thiolase-like superfamily. Chalcone/stilbene synthases family. (401 aa)
	A0A0D3EIU2	Uncharacterized protein. (174 aa)
	A0A0D3EK59	BZIP domain-containing protein. (200 aa)
	A0A0D3EKE0	Uncharacterized protein. (1145 aa)
	A0A0D3EKU3	Uncharacterized protein. (138 aa)
	A0A0D3EL47	Uncharacterized protein. (276 aa)
	A0A0D3EMN1	BHLH domain-containing protein. (642 aa)
	A0A0D3EMX6	Uncharacterized protein. (508 aa)
	A0A0D3EQ97	Uncharacterized protein. (653 aa)
	A0A0D3EQY3	Uncharacterized protein; Belongs to the thiolase-like superfamily. Chalcone/stilbene synthases family. (186 aa)
	A0A0D3ETJ5	Uncharacterized protein. (737 aa)
	A0A0D3EU00	Uncharacterized protein. (180 aa)
	A0A0D3EZS6	Uncharacterized protein. (136 aa)
	A0A0D3F0R3	Uncharacterized protein. (630 aa)
	A0A0D3F1H8	CCT domain-containing protein. (147 aa)
	A0A0D3F256	BZIP domain-containing protein. (290 aa)
	A0A0D3F2T6	Uncharacterized protein. (185 aa)
	A0A0D3F5Y9	Uncharacterized protein. (173 aa)
	A0A0D3F6Q5	Photolyase/cryptochrome alpha/beta domain-containing protein. (719 aa)
	A0A0D3F7A7	Uncharacterized protein. (174 aa)
	A0A0D3F7H2	Uncharacterized protein. (246 aa)
	A0A0D3F7P3	Uncharacterized protein. (495 aa)
	A0A0D3F7T3	Photolyase/cryptochrome alpha/beta domain-containing protein. (651 aa)
	A0A0D3F802	TCP domain-containing protein. (210 aa)
	A0A0D3FB04	Uncharacterized protein. (1325 aa)
	A0A0D3FC88	Uncharacterized protein. (509 aa)
	A0A0D3FEX1	TCP domain-containing protein. (130 aa)
	A0A0D3FF84	Protein kinase domain-containing protein. (321 aa)
	A0A0D3FH23	Uncharacterized protein. (767 aa)
	A0A0D3FHM4	Phytochrome; Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light: the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region. (1159 aa)
	A0A0D3FL14	Uncharacterized protein. (140 aa)
	A0A0D3FMA4	Uncharacterized protein; Belongs to the thiolase-like superfamily. Chalcone/stilbene synthases family. (137 aa)
	A0A0D3FNB9	Phytochrome; Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light: the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region. (1128 aa)
	A0A0D3FPE5	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (388 aa)
	A0A0D3FPF2	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (340 aa)
	A0A0D3FSW4	TCP domain-containing protein. (183 aa)
	A0A0D3FUR5	Uncharacterized protein; Belongs to the thiolase-like superfamily. Chalcone/stilbene synthases family. (356 aa)
	A0A0D3FVL4	Uncharacterized protein. (173 aa)
	A0A0D3FWH7	Photolyase/cryptochrome alpha/beta domain-containing protein. (700 aa)
	A0A0D3FXB1	Uncharacterized protein. (174 aa)
	A0A0D3FXI0	CCT domain-containing protein. (124 aa)
	A0A0D3G2T7	Uncharacterized protein. (418 aa)
	A0A0D3G792	RAI1 domain-containing protein. (510 aa)
	A0A0D3G9D4	Chal_sti_synt_N domain-containing protein; Belongs to the thiolase-like superfamily. Chalcone/stilbene synthases family. (118 aa)
	A0A0D3G9T9	Uncharacterized protein. (188 aa)
	A0A0D3GB18	WD_REPEATS_REGION domain-containing protein. (1098 aa)
	A0A0D3GCP2	Uncharacterized protein. (760 aa)
	A0A0D3GD16	Uncharacterized protein. (179 aa)
	A0A0D3GF98	CCT domain-containing protein. (219 aa)
	A0A0D3GH22	Uncharacterized protein. (176 aa)
	A0A0D3GHR0	Uncharacterized protein. (173 aa)
	A0A0D3GIE8	BZIP domain-containing protein. (164 aa)
	A0A0D3GIE9	BZIP domain-containing protein. (75 aa)
	A0A0D3GJF1	CCT domain-containing protein. (135 aa)
	A0A0D3GK95	F-box domain-containing protein. (516 aa)
	A0A0D3GK96	PAS domain-containing protein. (122 aa)
	A0A0D3GLK5	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (333 aa)
	A0A0D3GPG7	Chal_sti_synt_N domain-containing protein; Belongs to the thiolase-like superfamily. Chalcone/stilbene synthases family. (149 aa)
	A0A0D3GR68	Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family. (216 aa)
	A0A0D3GRT3	Chal_sti_synt_C domain-containing protein; Belongs to the thiolase-like superfamily. Chalcone/stilbene synthases family. (241 aa)
	A0A0D3GVC8	Uncharacterized protein. (743 aa)
	A0A0D3GWI3	Uncharacterized protein. (738 aa)
	A0A0D3GXH1	Uncharacterized protein. (98 aa)
	A0A0D3GXN5	Uncharacterized protein. (382 aa)
	A0A0D3GXZ1	Uncharacterized protein. (222 aa)
	A0A0D3H439	Uncharacterized protein. (276 aa)
	A0A0D3H8U6	Uncharacterized protein. (155 aa)
	A0A0D3H8U7	Uncharacterized protein. (111 aa)
	A0A0D3H9B3	Uncharacterized protein. (623 aa)
	A0A0D3HCQ3	Uncharacterized protein. (215 aa)
	A0A0D3HGQ1	Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family. (280 aa)
	A0A0D3HIC0	Uncharacterized protein. (173 aa)
	A0A0D3HIG2	Uncharacterized protein. (820 aa)
	A0A0D3HKQ2	Uncharacterized protein. (184 aa)
	A0A0D3HMI5	Uncharacterized protein; Belongs to the thiolase-like superfamily. Chalcone/stilbene synthases family. (370 aa)
	A0A0D3HMI8	Chal_sti_synt_N domain-containing protein; Belongs to the thiolase-like superfamily. Chalcone/stilbene synthases family. (59 aa)
	A0A0D3HMI9	Chal_sti_synt_N domain-containing protein; Belongs to the thiolase-like superfamily. Chalcone/stilbene synthases family. (133 aa)
	A0A0D3HMJ0	Uncharacterized protein; Belongs to the thiolase-like superfamily. Chalcone/stilbene synthases family. (327 aa)
	A0A0D3HMJ2	Uncharacterized protein; Belongs to the thiolase-like superfamily. Chalcone/stilbene synthases family. (321 aa)
	A0A0D3HMW6	PAS domain-containing protein. (630 aa)
	A0A0D3HN53	Uncharacterized protein; Belongs to the thiolase-like superfamily. Chalcone/stilbene synthases family. (244 aa)
	A0A0D3HPK3	Uncharacterized protein. (162 aa)
	A0A0D3HRI0	Uncharacterized protein. (173 aa)
	A0A0D3HRZ8	Chal_sti_synt_N domain-containing protein; Belongs to the thiolase-like superfamily. Chalcone/stilbene synthases family. (265 aa)
	A0A0D3HSQ1	Uncharacterized protein. (175 aa)
	A0A0D3HVD3	Uncharacterized protein. (662 aa)
	A0A0D3HWF0	Uncharacterized protein. (337 aa)
	A0A0D3HWF5	BHLH domain-containing protein. (378 aa)
	A0A0D3HWF9	BHLH domain-containing protein. (320 aa)

Your Current Organism:

Oryza barthii

NCBI taxonomy Id: 65489
Other names: African wild rice, O. barthii, Oryza barthii A.Chev., Oryza breviligulata, Oryza breviligulata A.Chev. & Roehr.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0D3EK59	A0A0D3EMN1	BZIP domain-containing protein.	BHLH domain-containing protein.	0.450
A0A0D3EK59	A0A0D3ETJ5	BZIP domain-containing protein.	Uncharacterized protein.	0.793
A0A0D3EK59	A0A0D3EZS6	BZIP domain-containing protein.	Uncharacterized protein.	0.920
A0A0D3EK59	A0A0D3F7P3	BZIP domain-containing protein.	Uncharacterized protein.	0.466
A0A0D3EK59	A0A0D3FB04	BZIP domain-containing protein.	Uncharacterized protein.	0.989
A0A0D3EK59	A0A0D3FHM4	BZIP domain-containing protein.	Phytochrome; Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light: the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region.	0.439
A0A0D3EK59	A0A0D3FNB9	BZIP domain-containing protein.	Phytochrome; Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light: the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region.	0.429
A0A0D3EK59	A0A0D3GB18	BZIP domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.896
A0A0D3EKE0	A0A0D3EMN1	Uncharacterized protein.	BHLH domain-containing protein.	0.426
A0A0D3EKE0	A0A0D3EMX6	Uncharacterized protein.	Uncharacterized protein.	0.694
A0A0D3EKE0	A0A0D3EQ97	Uncharacterized protein.	Uncharacterized protein.	0.969
A0A0D3EKE0	A0A0D3ETJ5	Uncharacterized protein.	Uncharacterized protein.	0.607
A0A0D3EKE0	A0A0D3F0R3	Uncharacterized protein.	Uncharacterized protein.	0.981
A0A0D3EKE0	A0A0D3F1H8	Uncharacterized protein.	CCT domain-containing protein.	0.542
A0A0D3EKE0	A0A0D3F6Q5	Uncharacterized protein.	Photolyase/cryptochrome alpha/beta domain-containing protein.	0.459
A0A0D3EKE0	A0A0D3F7H2	Uncharacterized protein.	Uncharacterized protein.	0.542
A0A0D3EKE0	A0A0D3F7P3	Uncharacterized protein.	Uncharacterized protein.	0.972
A0A0D3EKE0	A0A0D3F7T3	Uncharacterized protein.	Photolyase/cryptochrome alpha/beta domain-containing protein.	0.501
A0A0D3EKE0	A0A0D3FB04	Uncharacterized protein.	Uncharacterized protein.	0.973
A0A0D3EKE0	A0A0D3FC88	Uncharacterized protein.	Uncharacterized protein.	0.694