(28 nodes) Twin-arginine translocation pathway, signal sequence network (Methylocystis bryophila)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ARN80758.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (556 aa)
	ARN82667.1	Glucan biosynthesis protein D; Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs). (527 aa)
	ARN83742.1	Ubiquinol-cytochrome c reductase iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis. (172 aa)
	ARN82120.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the NiCoT transporter (TC 2.A.52) family. (344 aa)
	ARN82051.1	Serine peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase S1C family. (504 aa)
	ARN81868.1	Uptake hydrogenase small subunit; Derived by automated computational analysis using gene prediction method: Protein Homology. (356 aa)
	ARN81654.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (201 aa)
	ARN83598.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (620 aa)
	ARN81575.1	Peptidylprolyl isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (178 aa)
	ARN81548.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (421 aa)
	ARN81421.1	Glucan biosynthesis protein D; Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs). (513 aa)
	ARN81266.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (59 aa)
	ARN80982.1	Cupin; Derived by automated computational analysis using gene prediction method: Protein Homology. (415 aa)
	ARN80869.1	Bilirubin oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (559 aa)
	ARN80856.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (405 aa)
	ARN80611.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (80 aa)
	ARN80462.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (484 aa)
	ARN83356.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (263 aa)
	ARN80340.1	Haloacid dehalogenase, type II; Derived by automated computational analysis using gene prediction method: Protein Homology. (249 aa)
	lnt	Apolipoprotein N-acyltransferase; Catalyzes the phospholipid dependent N-acylation of the N- terminal cysteine of apolipoprotein, the last step in lipoprotein maturation; Belongs to the CN hydrolase family. Apolipoprotein N- acyltransferase subfamily. (545 aa)
	tolB	Tol-Pal system beta propeller repeat protein TolB; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity. (429 aa)
	ARN83306.1	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (320 aa)
	ARN79937.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (558 aa)
	ARN83174.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (295 aa)
	ARN83864.1	Oxalate decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (395 aa)
	ARN83160.1	Oxalate decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (397 aa)
	ARN83846.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (236 aa)
	ARN82776.1	Serine/threonine protein phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology. (359 aa)

Your Current Organism:

Methylocystis bryophila

NCBI taxonomy Id: 655015
Other names: DSM 21852, M. bryophila, Methylocystis bryophila Belova et al. 2013, Methylocystis sp. H2s, Methylocystis sp. S284, VKM B-2545, strain H2s

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARN80982.1	ARN83160.1	B1812_07745	B1812_21095	Cupin; Derived by automated computational analysis using gene prediction method: Protein Homology.	Oxalate decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.917
ARN80982.1	ARN83864.1	B1812_07745	B1812_21100	Cupin; Derived by automated computational analysis using gene prediction method: Protein Homology.	Oxalate decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.914
ARN81654.1	ARN83356.1	B1812_11860	B1812_04005	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.410
ARN83160.1	ARN80982.1	B1812_21095	B1812_07745	Oxalate decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cupin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.917
ARN83160.1	ARN83864.1	B1812_21095	B1812_21100	Oxalate decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Oxalate decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.969
ARN83356.1	ARN81654.1	B1812_04005	B1812_11860	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.410
ARN83864.1	ARN80982.1	B1812_21100	B1812_07745	Oxalate decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cupin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.914
ARN83864.1	ARN83160.1	B1812_21100	B1812_21095	Oxalate decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Oxalate decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.969

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