(13 nodes) PAS domain superfamily network (Zunongwangia profunda)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ZPR_4320	Thioesterase superfamily protein. (310 aa)
	ZPR_1017	Two-component system sensor histidine kinase. (369 aa)
	ZPR_2014	Sensory transduction histidine kinase. (414 aa)
	ZPR_2262	PAS domain-containing protein. (583 aa)
	ZPR_2280	Two-component system sensor histidine kinase/methyl-esterase/transferase hybrid. (1218 aa)
	ZPR_2281	Bacteriophytochrome. (741 aa)
	ZPR_2293	Two-component system sensor histidine kinase/response regulator hybrid. (1567 aa)
	ZPR_1892	Histidine kinase sensor protein. (1036 aa)
	ZPR_1259	PAS/PAC sensor signal transduction histidine kinase. (332 aa)
	ZPR_2477	Histidine kinase sensor protein. (365 aa)
	ZPR_2478	Putative two-component sensor protein. (571 aa)
	ZPR_3573	Sensory transduction histidine kinase. (789 aa)
	ZPR_3699	Protein containing GAF domain. (375 aa)

Your Current Organism:

Zunongwangia profunda

NCBI taxonomy Id: 655815
Other names: Z. profunda SM-A87, Zunongwangia profunda SM-A87, Zunongwangia profunda str. SM-A87, Zunongwangia profunda strain SM-A87

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
ZPR_1017	ZPR_1259	Two-component system sensor histidine kinase.	PAS/PAC sensor signal transduction histidine kinase.	0.652
ZPR_1017	ZPR_1892	Two-component system sensor histidine kinase.	Histidine kinase sensor protein.	0.811
ZPR_1017	ZPR_2014	Two-component system sensor histidine kinase.	Sensory transduction histidine kinase.	0.912
ZPR_1017	ZPR_2262	Two-component system sensor histidine kinase.	PAS domain-containing protein.	0.415
ZPR_1017	ZPR_2280	Two-component system sensor histidine kinase.	Two-component system sensor histidine kinase/methyl-esterase/transferase hybrid.	0.609
ZPR_1017	ZPR_2281	Two-component system sensor histidine kinase.	Bacteriophytochrome.	0.481
ZPR_1017	ZPR_2293	Two-component system sensor histidine kinase.	Two-component system sensor histidine kinase/response regulator hybrid.	0.890
ZPR_1017	ZPR_2477	Two-component system sensor histidine kinase.	Histidine kinase sensor protein.	0.624
ZPR_1017	ZPR_3573	Two-component system sensor histidine kinase.	Sensory transduction histidine kinase.	0.630
ZPR_1259	ZPR_1017	PAS/PAC sensor signal transduction histidine kinase.	Two-component system sensor histidine kinase.	0.652
ZPR_1259	ZPR_1892	PAS/PAC sensor signal transduction histidine kinase.	Histidine kinase sensor protein.	0.588
ZPR_1259	ZPR_2014	PAS/PAC sensor signal transduction histidine kinase.	Sensory transduction histidine kinase.	0.530
ZPR_1259	ZPR_2262	PAS/PAC sensor signal transduction histidine kinase.	PAS domain-containing protein.	0.433
ZPR_1259	ZPR_2280	PAS/PAC sensor signal transduction histidine kinase.	Two-component system sensor histidine kinase/methyl-esterase/transferase hybrid.	0.649
ZPR_1259	ZPR_2293	PAS/PAC sensor signal transduction histidine kinase.	Two-component system sensor histidine kinase/response regulator hybrid.	0.846
ZPR_1259	ZPR_2477	PAS/PAC sensor signal transduction histidine kinase.	Histidine kinase sensor protein.	0.773
ZPR_1259	ZPR_2478	PAS/PAC sensor signal transduction histidine kinase.	Putative two-component sensor protein.	0.441
ZPR_1259	ZPR_3573	PAS/PAC sensor signal transduction histidine kinase.	Sensory transduction histidine kinase.	0.408
ZPR_1259	ZPR_3699	PAS/PAC sensor signal transduction histidine kinase.	Protein containing GAF domain.	0.719
ZPR_1892	ZPR_1017	Histidine kinase sensor protein.	Two-component system sensor histidine kinase.	0.811