(5 nodes) Pore complex, and Mitochondrion targeting sequence binding network (Metarhizium acridum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	MAC_01160	Mitochondrial outer membrane 72kDa protein. (622 aa)
	MAC_01165	Outer mitochondrial membrane protein porin. (283 aa)
	MAC_01647	Mitochondrial import receptor subunit tom-22. (153 aa)
	MAC_05227	Mitochondrial import receptor subunit TOM40. (377 aa)
	MAC_06410	Mitochondrial import receptor subunit tom-20. (196 aa)

Your Current Organism:

Metarhizium acridum

NCBI taxonomy Id: 655827
Other names: M. acridum CQMa 102, Metarhizium acridum CQMa 102, Metarhizium anisopliae var. acridum CQMa 102

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MAC_01160	MAC_01165	E9DU62	E9DU67	Mitochondrial outer membrane 72kDa protein.	Outer mitochondrial membrane protein porin.	0.866
MAC_01160	MAC_01647	E9DU62	E9DVJ9	Mitochondrial outer membrane 72kDa protein.	Mitochondrial import receptor subunit tom-22.	0.980
MAC_01160	MAC_05227	E9DU62	E9E5S9	Mitochondrial outer membrane 72kDa protein.	Mitochondrial import receptor subunit TOM40.	0.978
MAC_01160	MAC_06410	E9DU62	E9E962	Mitochondrial outer membrane 72kDa protein.	Mitochondrial import receptor subunit tom-20.	0.994
MAC_01165	MAC_01160	E9DU67	E9DU62	Outer mitochondrial membrane protein porin.	Mitochondrial outer membrane 72kDa protein.	0.866
MAC_01165	MAC_01647	E9DU67	E9DVJ9	Outer mitochondrial membrane protein porin.	Mitochondrial import receptor subunit tom-22.	0.784
MAC_01165	MAC_05227	E9DU67	E9E5S9	Outer mitochondrial membrane protein porin.	Mitochondrial import receptor subunit TOM40.	0.954
MAC_01165	MAC_06410	E9DU67	E9E962	Outer mitochondrial membrane protein porin.	Mitochondrial import receptor subunit tom-20.	0.911
MAC_01647	MAC_01160	E9DVJ9	E9DU62	Mitochondrial import receptor subunit tom-22.	Mitochondrial outer membrane 72kDa protein.	0.980
MAC_01647	MAC_01165	E9DVJ9	E9DU67	Mitochondrial import receptor subunit tom-22.	Outer mitochondrial membrane protein porin.	0.784
MAC_01647	MAC_05227	E9DVJ9	E9E5S9	Mitochondrial import receptor subunit tom-22.	Mitochondrial import receptor subunit TOM40.	0.999
MAC_01647	MAC_06410	E9DVJ9	E9E962	Mitochondrial import receptor subunit tom-22.	Mitochondrial import receptor subunit tom-20.	0.992
MAC_05227	MAC_01160	E9E5S9	E9DU62	Mitochondrial import receptor subunit TOM40.	Mitochondrial outer membrane 72kDa protein.	0.978
MAC_05227	MAC_01165	E9E5S9	E9DU67	Mitochondrial import receptor subunit TOM40.	Outer mitochondrial membrane protein porin.	0.954
MAC_05227	MAC_01647	E9E5S9	E9DVJ9	Mitochondrial import receptor subunit TOM40.	Mitochondrial import receptor subunit tom-22.	0.999
MAC_05227	MAC_06410	E9E5S9	E9E962	Mitochondrial import receptor subunit TOM40.	Mitochondrial import receptor subunit tom-20.	0.989
MAC_06410	MAC_01160	E9E962	E9DU62	Mitochondrial import receptor subunit tom-20.	Mitochondrial outer membrane 72kDa protein.	0.994
MAC_06410	MAC_01165	E9E962	E9DU67	Mitochondrial import receptor subunit tom-20.	Outer mitochondrial membrane protein porin.	0.911
MAC_06410	MAC_01647	E9E962	E9DVJ9	Mitochondrial import receptor subunit tom-20.	Mitochondrial import receptor subunit tom-22.	0.992
MAC_06410	MAC_05227	E9E962	E9E5S9	Mitochondrial import receptor subunit tom-20.	Mitochondrial import receptor subunit TOM40.	0.989