(10 nodes) Error-free translesion synthesis network (Metarhizium acridum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	MAC_05369	Sister chromatid cohesion protein Eso1. (585 aa)
	MAC_05313	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (278 aa)
	MAC_02768	Uncharacterized protein. (215 aa)
	MAC_00428	REV7-like protein. (274 aa)
	MAC_00683	Ubiquitin-conjugating enzyme E2; Belongs to the ubiquitin-conjugating enzyme family. (351 aa)
	MAC_01865	DNA polymerase kappa. (501 aa)
	MAC_07842	Zn(2)-C6 fungal-type domain-containing protein. (224 aa)
	MAC_05314	Vezatin domain-containing protein. (614 aa)
	MAC_05357	DNA polymerase. (1677 aa)
	MAC_05331	DNA repair protein REV1; Deoxycytidyl transferase involved in DNA repair. Transfers a dCMP residue from dCTP to the 3'-end of a DNA primer in a template- dependent reaction. May assist in the first step in the bypass of abasic lesions by the insertion of a nucleotide opposite the lesion. Required for normal induction of mutations by physical and chemical agents; Belongs to the DNA polymerase type-Y family. (1139 aa)

Your Current Organism:

Metarhizium acridum

NCBI taxonomy Id: 655827
Other names: M. acridum CQMa 102, Metarhizium acridum CQMa 102, Metarhizium anisopliae var. acridum CQMa 102

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MAC_00428	MAC_00683	E9DRQ9	E9DST5	REV7-like protein.	Ubiquitin-conjugating enzyme E2; Belongs to the ubiquitin-conjugating enzyme family.	0.569
MAC_00428	MAC_01865	E9DRQ9	E9DW67	REV7-like protein.	DNA polymerase kappa.	0.888
MAC_00428	MAC_02768	E9DRQ9	E9DYS0	REV7-like protein.	Uncharacterized protein.	0.910
MAC_00428	MAC_05313	E9DRQ9	E9E615	REV7-like protein.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.751
MAC_00428	MAC_05314	E9DRQ9	E9E616	REV7-like protein.	Vezatin domain-containing protein.	0.751
MAC_00428	MAC_05331	E9DRQ9	E9E633	REV7-like protein.	DNA repair protein REV1; Deoxycytidyl transferase involved in DNA repair. Transfers a dCMP residue from dCTP to the 3'-end of a DNA primer in a template- dependent reaction. May assist in the first step in the bypass of abasic lesions by the insertion of a nucleotide opposite the lesion. Required for normal induction of mutations by physical and chemical agents; Belongs to the DNA polymerase type-Y family.	0.935
MAC_00428	MAC_05357	E9DRQ9	E9E659	REV7-like protein.	DNA polymerase.	0.999
MAC_00428	MAC_05369	E9DRQ9	E9E671	REV7-like protein.	Sister chromatid cohesion protein Eso1.	0.962
MAC_00428	MAC_07842	E9DRQ9	E9ED94	REV7-like protein.	Zn(2)-C6 fungal-type domain-containing protein.	0.910
MAC_00683	MAC_00428	E9DST5	E9DRQ9	Ubiquitin-conjugating enzyme E2; Belongs to the ubiquitin-conjugating enzyme family.	REV7-like protein.	0.569
MAC_00683	MAC_05313	E9DST5	E9E615	Ubiquitin-conjugating enzyme E2; Belongs to the ubiquitin-conjugating enzyme family.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.813
MAC_00683	MAC_05314	E9DST5	E9E616	Ubiquitin-conjugating enzyme E2; Belongs to the ubiquitin-conjugating enzyme family.	Vezatin domain-containing protein.	0.813
MAC_00683	MAC_05357	E9DST5	E9E659	Ubiquitin-conjugating enzyme E2; Belongs to the ubiquitin-conjugating enzyme family.	DNA polymerase.	0.719
MAC_00683	MAC_05369	E9DST5	E9E671	Ubiquitin-conjugating enzyme E2; Belongs to the ubiquitin-conjugating enzyme family.	Sister chromatid cohesion protein Eso1.	0.608
MAC_01865	MAC_00428	E9DW67	E9DRQ9	DNA polymerase kappa.	REV7-like protein.	0.888
MAC_01865	MAC_02768	E9DW67	E9DYS0	DNA polymerase kappa.	Uncharacterized protein.	0.872
MAC_01865	MAC_05313	E9DW67	E9E615	DNA polymerase kappa.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.906
MAC_01865	MAC_05314	E9DW67	E9E616	DNA polymerase kappa.	Vezatin domain-containing protein.	0.906
MAC_01865	MAC_05331	E9DW67	E9E633	DNA polymerase kappa.	DNA repair protein REV1; Deoxycytidyl transferase involved in DNA repair. Transfers a dCMP residue from dCTP to the 3'-end of a DNA primer in a template- dependent reaction. May assist in the first step in the bypass of abasic lesions by the insertion of a nucleotide opposite the lesion. Required for normal induction of mutations by physical and chemical agents; Belongs to the DNA polymerase type-Y family.	0.891
MAC_01865	MAC_05357	E9DW67	E9E659	DNA polymerase kappa.	DNA polymerase.	0.920